Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 6.5e-278 960.3 562 100.0
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 9.3e-224 780.4 577 79.5
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 3.3e-221 771.9 542 82.7
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.7e-193 679.9 538 74.7
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 3.2e-184 649.0 606 66.8
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 3.9e-182 642.1 549 71.0
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 2.0e-181 639.8 549 70.5
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 7.0e-179 631.3 643 60.8
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 8.5e-177 624.4 643 61.6
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 4.4e-173 612.1 392 89.8
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 1.3e-169 600.5 540 68.3
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.2e-159 567.4 539 63.5
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 2.0e-154 550.1 536 63.2
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 3.5e-154 549.3 545 58.2
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 5.9e-154 548.5 533 61.5
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 8.0e-151 538.1 536 58.2
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.3e-148 530.8 528 59.3
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 5.9e-146 521.9 540 55.4
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 1.0e-145 521.2 567 52.2
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 5.0e-145 518.8 511 58.1
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 8.6e-145 518.1 544 57.2
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 2.5e-144 516.5 536 55.8
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 4.3e-144 515.8 540 56.7
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 5.6e-144 515.4 537 59.6
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 2.8e-143 513.1 616 53.9
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 2.8e-143 513.1 539 54.9
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 3.1e-142 509.6 514 61.7
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 6.8e-142 508.4 535 60.6
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.2e-141 507.7 534 58.2
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 3.7e-140 502.7 630 54.3
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 3.7e-140 502.7 562 58.0
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 6.4e-140 501.9 542 55.2
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 5.4e-139 498.8 392 67.9
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 3.5e-138 496.1 565 53.1
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 7.8e-138 495.0 539 54.7
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.0e-137 494.6 500 55.8
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 6.6e-137 491.9 567 55.9
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 2.8e-135 486.5 474 63.7
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.8e-135 486.5 543 54.7
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 4.0e-134 482.6 387 73.6
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.5e-133 480.7 536 56.7
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 3.7e-132 476.1 579 53.9
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 3.7e-132 476.1 537 57.2
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 6.4e-132 475.3 563 54.4
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 8.3e-132 474.9 305 74.8
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 2.4e-131 473.4 575 54.1
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 3.5e-130 469.5 551 56.6
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 4.6e-130 469.2 354 71.2
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 7.8e-130 468.4 305 72.8
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 3.0e-129 466.5 305 72.5
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 3.0e-129 466.5 565 54.7
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 2.5e-128 463.4 359 73.0
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 3.3e-128 463.0 497 59.8
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 3.3e-128 463.0 545 54.1
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 4.7e-127 459.1 587 46.2
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 1.1e-126 458.0 585 48.0
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.5e-125 454.1 516 54.1
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.6e-125 453.4 583 49.7
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 3.4e-125 453.0 615 52.2
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 3.7e-124 449.5 492 52.0
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 8.4e-124 448.4 592 50.8
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.9e-123 447.2 521 53.7
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.6e-122 444.1 366 62.0
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 6.0e-122 442.2 407 63.1
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 8.6e-121 438.3 529 49.9
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 4.3e-120 436.0 623 46.2
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.4e-118 431.0 546 51.8
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 4.0e-118 429.5 528 53.8
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 1.5e-117 427.6 540 51.9
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 1.5e-117 427.6 540 51.9
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.5e-117 427.6 566 50.9
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 2.0e-117 427.2 562 50.0
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 3.4e-117 426.4 528 53.2
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 4.4e-117 426.0 533 51.8
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 2.9e-116 423.3 540 51.5
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 3.8e-116 422.9 539 51.8
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.9e-115 420.6 534 53.2
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.9e-115 420.6 537 51.6
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 2.4e-115 420.2 272 73.2
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 9.3e-115 418.3 524 50.8
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.5e-114 416.4 306 65.4
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 6.0e-114 415.6 536 52.1
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 3.3e-112 409.8 570 47.4
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 7.3e-112 408.7 365 60.5
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.1e-111 407.1 590 48.3
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 6.2e-111 405.6 308 64.3
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 6.2e-111 405.6 536 46.6
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 1.5e-109 401.0 584 45.9
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.1e-102 378.3 524 49.4
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.4e-102 377.9 305 59.3
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 3.1e-102 376.7 299 62.2
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 4.5e-101 372.9 377 55.2
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 5.5e-99 365.9 307 60.3
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.2e-98 364.8 526 48.1
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 2.3e-97 360.5 402 54.5
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 3.9e-97 359.8 306 55.9
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.1e-96 358.2 513 47.4
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.9e-96 357.5 376 54.8
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 7.4e-96 355.5 376 50.5
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 7.4e-96 355.5 376 50.5
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 2.1e-95 354.0 623 41.6
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.4e-94 351.3 376 53.7
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.8e-94 350.9 531 47.8
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.5e-90 336.7 453 47.9
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 1.5e-88 331.3 415 46.7
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.3e-87 328.2 597 39.9
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 2.8e-87 327.0 537 42.1
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.4e-86 324.7 307 55.7
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 1.4e-83 314.7 298 57.4
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.2e-83 313.2 502 44.6
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 4.1e-78 296.6 333 45.6
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 2.2e-76 290.8 331 43.2
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 5.1e-73 279.6 326 42.3
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 2.8e-71 273.9 408 50.0
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 5.7e-64 249.6 144 82.6
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.7e-63 248.1 256 55.9
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.7e-63 248.1 252 61.9
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.4e-57 228.4 263 44.9
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 1.0e-49 202.2 126 79.4
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 3.1e-46 190.7 381 32.0
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 5.9e-45 186.4 149 71.1
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 5.7e-40 169.9 290 37.6
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.1e-30 139.0 101 67.3
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 5.0e-28 130.2 190 41.6
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 1.4e-22 112.1 68 76.5
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 2.5e-19 101.3 113 49.6
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.6e-18 97.4 256 32.0
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 3.7e-15 87.4 62 61.3
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 7.1e-14 83.2 62 59.7
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 1.9e-11 75.1 61 49.2
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 1.8e-09 68.6 45 75.6
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.5e-08 65.5 54 55.6
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 2.0e-08 65.1 307 34.2
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 2.6e-08 64.7 75 46.7


User provided reference genes

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