Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22083 Trifolium pratense HOM05D059790 ORTHO05D411916 3.6e-41 171.4 81 100.0
TPR.G32416 Trifolium pratense HOM05D000200 ORTHO05D000262 9.9e-15 83.6 79 60.8
SGA_v2.0_scaffold1G00689 Striga asiatica HOM05D000200 ORTHO05D000262 1.1e-08 63.5 73 43.8
TPR.G1050 Trifolium pratense HOM05D059790 ORTHO05D412006 5.3e-08 61.2 42 71.4
Peaxi162Scf00120g00525 Petunia axillaris HOM05D000200 ORTHO05D000262 3.4e-07 58.5 54 53.7
CDE04G0243 Ceratophyllum demersum HOM05D000200 ORTHO05D000262 4.5e-07 58.2 68 47.1
Solyc11g006220.2 Solanum lycopersicum HOM05D000200 ORTHO05D000262 4.5e-07 58.2 68 47.1
Sopen11g002140 Solanum pennellii HOM05D000200 ORTHO05D000262 4.5e-07 58.2 68 47.1
CAN.G1256.5 Capsicum annuum HOM05D000200 ORTHO05D000262 5.8e-07 57.8 68 47.1
SGA_v2.0_scaffold292G47363 Striga asiatica HOM05D000200 ORTHO05D000262 5.8e-07 57.8 72 38.9
Aa31LG2G12200 Aethionema arabicum HOM05D000200 ORTHO05D000262 7.6e-07 57.4 68 47.1
DCAR_023875 Daucus carota HOM05D000200 ORTHO05D000262 1.3e-06 56.6 68 45.6
Pp3c15_24240 Physcomitrium patens HOM05D000200 ORTHO05D000262 1.3e-06 56.6 68 45.6
AL1G19170 Arabidopsis lyrata HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 47.1
AT1G08730 Arabidopsis thaliana HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 47.1
AT1G54560 Arabidopsis thaliana HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 45.6
BcaB03g13317 Brassica carinata HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 47.1
A08p34990 Brassica napus HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 47.1
BraA08t35410Z Brassica rapa HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 47.1
Carub.0001s0808 Capsella rubella HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 47.1
Cc01_g18560 Coffea canephora HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 45.6
Migut.D00402 Erythranthe guttata HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 45.6
Thhalv10006560m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 47.1
Gohir.D08G234000 Gossypium hirsutum HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 45.6
SalBow4G0304 Salvia bowleyana HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 45.6
SalBow4G1735 Salvia bowleyana HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 45.6
Sp1g07380 Schrenkiella parvula HOM05D000200 ORTHO05D000262 1.7e-06 56.2 68 47.1
BcaB07g31094 Brassica carinata HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
BcaC04g22019 Brassica carinata HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
A09p19480 Brassica napus HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
C09p24560 Brassica napus HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
BolC9t55370H Brassica oleracea HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
BraA09t37563Z Brassica rapa HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
Carub.0002s0909 Capsella rubella HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
CiPaw.08G119300 Carya illinoinensis HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
CDE02G2151 Ceratophyllum demersum HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
Haze_04388 Corylus avellana HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
Thhalv10023213m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
Lj2C1139G2 Lonicera japonica HOM05D000200 ORTHO05D000262 2.2e-06 55.8 78 38.5
Lj1g0027248 Lotus japonicus HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
QL03p029079 Quercus lobata HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
SpUn0001_0180 Schrenkiella parvula HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
Sc06g0004070 Simmondsia chinensis HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 44.1
THA.LOC104808026 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
THA.LOC104823748 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 2.2e-06 55.8 68 45.6
ATR0051G032 Amborella trichopoda HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 44.1
BcaC07g38444 Brassica carinata HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 47.1
C08p12130 Brassica napus HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 47.1
BolC8t48851H Brassica oleracea HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 47.1
Cpa.g.sc59.52 Carica papaya HOM05D000200 ORTHO05D000262 2.9e-06 55.5 70 47.1
AUR62001065 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 44.1
AUR62004888 Chenopodium quinoa HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 44.1
Haze_25956 Corylus avellana HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 44.1
Mapoly0012s0190 Marchantia polymorpha HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 44.1
Hund06941 Selenicereus undatus HOM05D000200 ORTHO05D000262 2.9e-06 55.5 68 44.1
AagrBONN_evm.TU.Sc2ySwM_117.1223 Anthoceros agrestis HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 45.6
CARHR214520 Cardamine hirsuta HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 45.6
CiPaw.07G070400 Carya illinoinensis HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 44.1
Cc02_g09120 Coffea canephora HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 44.1
ECA233G0752 Erigeron canadensis HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 42.6
Lsat_1_v5_gn_8_24921 Lactuca sativa HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 44.1
Oeu028667.2 Olea europaea HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 44.1
Os01g0584200 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 47.1
Pp3c9_25360 Physcomitrium patens HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 45.6
Sabra19G0026500 Salix brachista HOM05D000200 ORTHO05D000262 3.8e-06 55.1 68 44.1
Atru.chr2.883 Acer truncatum HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
ATR0730G029 Amborella trichopoda HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Aqoxy2G03590 Aquilegia oxysepala HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
arahy.Tifrunner.gnm1.ann1.9241MQ Arachis hypogaea HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
arahy.Tifrunner.gnm1.ann1.BVIK45 Arachis hypogaea HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
arahy.Tifrunner.gnm1.ann1.IA27LB Arachis hypogaea HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
arahy.Tifrunner.gnm1.ann1.RZI0W9 Arachis hypogaea HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
EL10Ac4g09047 Beta vulgaris HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
CSS0011235 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
CANSAT54G2183 Cannabis sativa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Cpa.g.sc162.9 Carica papaya HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
CDE06G1021 Ceratophyllum demersum HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Ca_09632_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 4.9e-06 54.7 73 45.2
Ciclev10018485m.g Citrus clementina HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Dinv05731 Davidia involucrata HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Duzib128G0361 Durio zibethinus HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Duzib177G0968 Durio zibethinus HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Eucgr.H04260 Eucalyptus grandis HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
FvH4_6g02450 Fragaria vesca HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
FAN02G4227 Fragaria x ananassa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
FAN05G1149 Fragaria x ananassa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
FAN05G1639 Fragaria x ananassa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
FAN09G0255 Fragaria x ananassa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
FAN14G1668 Fragaria x ananassa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
FAN14G3831 Fragaria x ananassa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Glyma.10G164200 Glycine max HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Glyma.20G226600 Glycine max HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Gohir.A08G217000 Gossypium hirsutum HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Gorai.004G248700 Gossypium raimondii HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Lsat_1_v5_gn_8_91480 Lactuca sativa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Lj6A640T41 Lonicera japonica HOM05D000200 ORTHO05D000262 4.9e-06 54.7 72 41.7
Lalb_Chr02g0148981 Lupinus albus HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Lalb_Chr21g0311131 Lupinus albus HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
MD04G1227800 Malus domestica HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
MD12G1244600 Malus domestica HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Manes.09G150000 Manihot esculenta HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Medtr1g069290 Medicago truncatula HOM05D000200 ORTHO05D000262 4.9e-06 54.7 73 45.2
Nn1g02665 Nelumbo nucifera HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Os06g0488200 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
PSO210G4046 Papaver somniferum HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
PSO832G0784 Papaver somniferum HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Phvul.007G189300 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Potri.013G043900 Populus trichocarpa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Potri.019G013800 Populus trichocarpa HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Prupe.6G347100 Prunus persica HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
PGR004G2288 Punica granatum HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Rhsim09G0138800 Rhododendron simsii HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Rhsim13G0032100 Rhododendron simsii HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
RcHm_v2.0_Chr3g0450241 Rosa chinensis HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
RcHm_v2.0_Chr3g0450271 Rosa chinensis HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
SMO347G0429 Selaginella moellendorffii HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Thecc.05G277200 Theobroma cacao HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
TPR.G22854 Trifolium pratense HOM05D000200 ORTHO05D000262 4.9e-06 54.7 73 45.2
TWI56G1283 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
TAR633G2405 Trochodendron aralioides HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
TAR636G1291 Trochodendron aralioides HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
vmacro02640 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
HPP92_011253 Vanilla planifolia HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
VMungo0720G0672 Vigna mungo HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
GSVIVG01036267001 Vitis vinifera HOM05D000200 ORTHO05D000262 4.9e-06 54.7 68 44.1
Duzib106G1291 Durio zibethinus HOM05D000200 ORTHO05D000262 6.4e-06 54.3 68 44.1
Migut.J00962 Erythranthe guttata HOM05D000200 ORTHO05D000262 6.4e-06 54.3 68 45.6
HanXRQChr07g0204511 Helianthus annuus HOM05D000200 ORTHO05D000262 6.4e-06 54.3 68 42.6
Ah.11g049840 Amaranthus hybridus HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
MSTRG.9012 Avicennia marina HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
AUR62011905 Chenopodium quinoa HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
AUR62024746 Chenopodium quinoa HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
Ca_09435_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
ClCG02G016920 Citrullus lanatus HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
MELO3C004411.2 Cucumis melo HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
CsaV3_2G003850 Cucumis sativus L. HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
Gohir.A11G250440 Gossypium hirsutum HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
Gohir.A11G250560 Gossypium hirsutum HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
Gohir.D11G261250 Gossypium hirsutum HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
Gorai.007G279700 Gossypium raimondii HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
Lj8C15G13 Lonicera japonica HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 47.1
Lj5g0016610 Lotus japonicus HOM05D000200 ORTHO05D000262 8.4e-06 53.9 73 43.8
Lalb_Chr02g0152891 Lupinus albus HOM05D000200 ORTHO05D000262 8.4e-06 53.9 73 43.8
Lalb_Chr21g0314181 Lupinus albus HOM05D000200 ORTHO05D000262 8.4e-06 53.9 73 42.5
MD15G1212800 Malus domestica HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 45.6
Medtr7g115430 Medicago truncatula HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
Psat0s3161g0320 Pisum sativum HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1
Psat6g063800 Pisum sativum HOM05D000200 ORTHO05D000262 8.4e-06 53.9 73 45.2
PGR004G0651 Punica granatum HOM05D000200 ORTHO05D000262 8.4e-06 53.9 75 41.3
Hund22146 Selenicereus undatus HOM05D000200 ORTHO05D000262 8.4e-06 53.9 85 38.8
TPR.G6923 Trifolium pratense HOM05D000200 ORTHO05D000262 8.4e-06 53.9 68 44.1


User provided reference genes

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