Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G21366 Trifolium pratense HOM05D003404 ORTHO05D004052 5.8e-18 93.2 48 100.0
TPR.G7178 Trifolium pratense HOM05D003404 ORTHO05D004052 2.1e-15 84.7 48 95.8
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 1.8e-11 71.6 48 85.4
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 4.0e-11 70.5 48 83.3
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 4.0e-11 70.5 48 83.3
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 2.6e-10 67.8 48 79.2
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 2.9e-09 64.3 48 77.1
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 2.9e-09 64.3 48 75.0
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 8.4e-09 62.8 48 75.0
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 8.4e-09 62.8 48 75.0
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 8.4e-09 62.8 48 77.1
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 8.4e-09 62.8 48 75.0
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 1.1e-08 62.4 48 75.0
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 1.1e-08 62.4 48 75.0
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 1.1e-08 62.4 48 75.0
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 1.1e-08 62.4 48 75.0
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 1.1e-08 62.4 48 75.0
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.4e-08 62.0 48 72.9
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 1.4e-08 62.0 48 72.9
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 1.9e-08 61.6 48 72.9
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 3.2e-08 60.8 48 72.9
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 3.2e-08 60.8 48 72.9
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 4.2e-08 60.5 48 72.9
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 4.2e-08 60.5 48 72.9
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 4.2e-08 60.5 48 70.8
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 4.2e-08 60.5 48 70.8
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 5.5e-08 60.1 48 68.8
Actinidia01639 Actinidia chinensis HOM05D003404 ORTHO05D004052 7.1e-08 59.7 48 70.8
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 7.1e-08 59.7 48 72.9
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 9.3e-08 59.3 48 68.8
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 9.3e-08 59.3 48 72.9
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 9.3e-08 59.3 46 73.9
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 9.3e-08 59.3 48 70.8
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 9.3e-08 59.3 48 70.8
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 9.3e-08 59.3 48 70.8
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 68.8
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 70.8
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 68.8
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 68.8
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 70.8
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 70.8
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 70.8
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 70.8
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 70.8
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 1.2e-07 58.9 48 68.8
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 1.6e-07 58.5 48 70.8
FAN10G0829 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.6e-07 58.5 48 70.8
FAN10G3720 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.6e-07 58.5 48 70.8
Oeu028473.1 Olea europaea HOM05D003404 ORTHO05D004052 1.6e-07 58.5 48 68.8
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 1.6e-07 58.5 48 68.8
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 68.8
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 68.8
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 68.8
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 68.8
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 70.8
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 70.8
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 68.8
Hund15388 Selenicereus undatus HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 68.8
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 2.1e-07 58.2 48 68.8
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 2.7e-07 57.8 48 66.7
BcaC06g31226 Brassica carinata HOM05D003404 ORTHO05D004052 2.7e-07 57.8 48 66.7
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 2.7e-07 57.8 48 68.8
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 2.7e-07 57.8 48 66.7
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 2.7e-07 57.8 48 66.7
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.7e-07 57.8 48 68.8
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.7e-07 57.8 48 68.8
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 2.7e-07 57.8 48 68.8
ATR1089G005 Amborella trichopoda HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 66.7
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 66.7
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 66.7
BcaC06g34049 Brassica carinata HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 66.7
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 66.7
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 66.7
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 68.8
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 68.8
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 68.8
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 68.8
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 68.8
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 68.8
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 3.5e-07 57.4 48 68.8
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 4.6e-07 57.0 48 70.8
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 4.6e-07 57.0 48 70.8
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 4.6e-07 57.0 48 70.8
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 4.6e-07 57.0 48 70.8
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 4.6e-07 57.0 48 70.8
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 6.0e-07 56.6 48 68.8
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 6.0e-07 56.6 48 70.8
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 64.6
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 64.6
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 64.6
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 64.6
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 64.6
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 68.8
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 68.8
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 70.8
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 7.9e-07 56.2 48 70.8
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 1.0e-06 55.8 48 64.6
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 1.0e-06 55.8 48 68.8
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 1.0e-06 55.8 48 68.8
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 1.3e-06 55.5 48 66.7
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.3e-06 55.5 48 64.6
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 1.3e-06 55.5 48 64.6
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 1.3e-06 55.5 48 66.7
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 1.3e-06 55.5 48 70.8
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.3e-06 55.5 48 64.6
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 1.8e-06 55.1 48 70.8
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 2.3e-06 54.7 48 62.5
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 2.3e-06 54.7 48 66.7
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 3.9e-06 53.9 48 62.5
Lsat_1_v5_gn_8_101580 Lactuca sativa HOM05D001355 ORTHO05D004052 3.9e-06 53.9 48 66.7
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 3.9e-06 53.9 48 62.5
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 3.9e-06 53.9 48 64.6
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 5.1e-06 53.5 48 64.6
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 5.1e-06 53.5 48 62.5
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 6.7e-06 53.1 48 62.5
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 6.7e-06 53.1 48 62.5


User provided reference genes

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