Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 1.2e-211 740.3 637 100.0
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 2.2e-160 570.1 633 80.1
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 5.3e-159 565.5 637 81.3
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 5.9e-142 508.8 626 75.4
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 5.2e-138 495.7 580 82.9
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 5.7e-137 492.3 645 72.6
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 2.8e-115 420.2 589 78.4
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 5.8e-113 412.5 534 80.3
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 6.4e-112 409.1 594 68.5
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 7.0e-111 405.6 585 69.9
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 7.0e-111 405.6 585 69.9
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 2.0e-110 404.1 587 71.2
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 3.3e-108 396.7 585 70.3
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 4.3e-108 396.4 582 69.4
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 5.6e-108 396.0 585 68.9
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 1.6e-107 394.4 585 70.6
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 1.1e-106 391.7 585 68.7
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 2.3e-106 390.6 585 70.1
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.0e-105 387.5 594 69.5
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 3.7e-104 383.3 562 70.8
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 6.4e-104 382.5 586 66.6
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 2.7e-102 377.1 686 47.2
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 7.8e-102 375.6 596 66.4
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 1.0e-101 375.2 573 69.1
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.7e-101 374.4 594 69.0
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 3.9e-101 373.2 584 67.6
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 1.5e-100 371.3 592 65.0
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 2.1e-99 367.5 585 68.7
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 4.7e-99 366.3 565 64.2
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 8.1e-99 365.5 591 66.2
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 8.1e-99 365.5 571 66.5
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 1.1e-98 365.2 571 66.4
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 2.3e-98 364.0 565 65.8
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 3.1e-98 363.6 580 63.1
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 1.2e-97 361.7 565 63.9
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 1.2e-97 361.7 591 66.2
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.5e-97 361.3 565 63.9
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 2.0e-97 360.9 565 66.7
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 4.4e-97 359.8 532 71.4
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 7.6e-97 359.0 580 64.5
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 2.9e-96 357.1 565 65.5
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 2.9e-96 357.1 604 63.4
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 8.4e-96 355.5 587 64.2
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 2.4e-95 354.0 580 64.8
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 1.2e-94 351.7 615 70.9
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 6.0e-94 349.4 600 63.0
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 1.3e-93 348.2 585 65.0
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 1.7e-93 347.8 614 64.3
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 2.3e-93 347.4 534 67.8
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 3.0e-93 347.1 584 64.9
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 2.1e-91 340.9 572 63.5
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 2.8e-91 340.5 581 64.4
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 8.1e-91 339.0 584 63.9
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 3.1e-90 337.0 582 66.2
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 2.0e-89 334.3 602 63.0
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 4.4e-89 333.2 561 65.8
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 9.9e-89 332.0 599 66.6
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 1.3e-88 331.6 591 71.4
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 3.8e-88 330.1 525 69.5
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 1.1e-87 328.6 585 63.2
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 1.9e-84 317.8 580 63.8
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 2.1e-83 314.3 570 63.0
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 2.1e-83 314.3 591 68.4
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 2.8e-83 313.9 591 68.4
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 1.4e-82 311.6 564 64.4
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 5.8e-81 306.2 580 69.8
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 3.8e-80 303.5 570 67.5
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 3.8e-80 303.5 601 60.9
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 1.1e-79 302.0 582 55.0
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 1.7e-77 294.7 195 73.3
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 5.1e-77 293.1 595 59.0
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 4.3e-76 290.0 196 74.0
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 6.2e-75 286.2 196 71.4
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 5.8e-73 279.6 566 67.8
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 3.8e-72 276.9 196 68.9
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 1.1e-71 275.4 197 68.0
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 5.5e-71 273.1 222 64.4
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 3.5e-70 270.4 598 63.5
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 1.9e-68 264.6 197 66.0
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 1.3e-67 261.9 552 42.0
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 7.1e-63 246.1 164 72.6
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 4.6e-62 243.4 562 64.4
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 5.1e-61 240.0 587 63.4
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 1.2e-57 228.8 598 60.0
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 3.4e-57 227.3 484 73.3
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 4.1e-50 203.8 532 62.0
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 1.1e-44 185.7 207 59.9
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 6.7e-37 159.8 253 48.2
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 1.3e-35 155.6 110 67.3
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 5.3e-34 150.2 123 62.6
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 1.3e-32 145.6 206 52.9
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 5.0e-32 143.7 238 37.8
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 7.7e-25 119.8 152 59.9
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 2.5e-23 114.8 155 56.8
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 3.0e-21 107.8 204 45.6
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 2.2e-19 101.7 71 66.2
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 1.7e-16 92.0 129 59.7
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 1.6e-09 68.9 106 39.6
Pp3c24_4430 Physcomitrium patens HOM05D007322 ORTHO05D009029 1.0e-08 66.2 100 33.0
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 8.6e-08 63.2 39 66.7
TPR.G20572 Trifolium pratense HOM05D003056 ORTHO05D003422 2.5e-07 61.6 127 33.1
Pp3c22_3230 Physcomitrium patens HOM05D003056 ORTHO05D003422 1.2e-06 59.3 121 28.1
Medtr2g036560 Medicago truncatula HOM05D003056 ORTHO05D003422 2.1e-06 58.5 131 32.1
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 2.1e-06 58.5 206 24.8
Gorai.011G155600 Gossypium raimondii HOM05D013428 ORTHO05D015803 4.7e-06 57.4 140 40.0
Medtr2g078690 Medicago truncatula HOM05D000424 ORTHO05D000355 6.1e-06 57.0 78 37.2


User provided reference genes

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