Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18105 Trifolium pratense HOM05D002154 ORTHO05D031247 1.2e-39 166.0 82 100.0
Medtr2g040570 Medicago truncatula HOM05D002154 ORTHO05D031247 2.0e-18 95.5 69 76.8
Psat1g131400 Pisum sativum HOM05D002154 ORTHO05D002362 3.2e-16 88.2 68 66.2
Lj6g0021060 Lotus japonicus HOM05D002154 ORTHO05D002362 3.5e-15 84.7 56 67.9
Phvul.009G229700 Phaseolus vulgaris HOM05D002154 ORTHO05D002362 1.5e-13 79.3 65 55.4
VMungo1309G1216 Vigna mungo HOM05D002154 ORTHO05D002362 2.5e-13 78.6 73 56.2
Sabra06G0115600 Salix brachista HOM05D002154 ORTHO05D002362 1.3e-12 76.3 68 52.9
Glyma.09G066700 Glycine max HOM05D002154 ORTHO05D002362 1.6e-12 75.9 59 57.6
arahy.Tifrunner.gnm1.ann1.BNX2MS Arachis hypogaea HOM05D002154 ORTHO05D002362 2.1e-12 75.5 65 53.8
Ciclev10009459m.g Citrus clementina HOM05D002154 ORTHO05D002362 3.7e-12 74.7 70 51.4
Dinv42351 Davidia involucrata HOM05D002154 ORTHO05D002362 3.7e-12 74.7 62 54.8
FAN26G2977 Fragaria x ananassa HOM05D002154 ORTHO05D002362 3.7e-12 74.7 65 55.4
FAN28G1595 Fragaria x ananassa HOM05D002154 ORTHO05D002362 3.7e-12 74.7 65 55.4
arahy.Tifrunner.gnm1.ann1.15I91Z Arachis hypogaea HOM05D002154 ORTHO05D002362 4.8e-12 74.3 65 52.3
Hma1.2p1_0672F.1_g200920 Hydrangea macrophylla HOM05D002154 ORTHO05D002362 6.2e-12 73.9 50 68.0
Lsat_1_v5_gn_7_34701 Lactuca sativa HOM05D002154 ORTHO05D002362 1.4e-11 72.8 68 54.4
PSO210G0533 Papaver somniferum HOM05D002154 ORTHO05D002362 1.4e-11 72.8 59 54.2
FAN23G0711 Fragaria x ananassa HOM05D002154 ORTHO05D002362 1.8e-11 72.4 65 53.8
Potri.006G146400 Populus trichocarpa HOM05D002154 ORTHO05D002362 1.8e-11 72.4 68 50.0
Glyma.15G172700 Glycine max HOM05D002154 ORTHO05D002362 4.0e-11 71.2 59 55.9
Atru.chr7.1646 Acer truncatum HOM05D002154 ORTHO05D002362 6.9e-11 70.5 50 64.0
MD15G1212200 Malus domestica HOM05D002154 ORTHO05D002362 9.0e-11 70.1 77 46.8
RcHm_v2.0_Chr2g0094081 Rosa chinensis HOM05D002154 ORTHO05D002362 9.0e-11 70.1 78 48.7
FAN19G0658 Fragaria x ananassa HOM05D002154 ORTHO05D002362 1.2e-10 69.7 68 51.5
Prupe.7G204500 Prunus persica HOM05D002154 ORTHO05D002362 1.2e-10 69.7 66 50.0
TAR624G0892 Trochodendron aralioides HOM05D002154 ORTHO05D002249 1.5e-10 69.3 70 51.4
Lalb_Chr11g0074451 Lupinus albus HOM05D002154 ORTHO05D002362 2.0e-10 68.9 70 48.6
Duzib168G2149 Durio zibethinus HOM05D002154 ORTHO05D002362 2.6e-10 68.6 72 50.0
Manes.03G037100 Manihot esculenta HOM05D002154 ORTHO05D002362 2.6e-10 68.6 70 47.1
FAN26G1857 Fragaria x ananassa HOM05D002154 ORTHO05D002362 4.5e-10 67.8 49 61.2
Cc06_g11780 Coffea canephora HOM05D002154 ORTHO05D002362 5.8e-10 67.4 50 56.0
CSS0028621 Camellia sinensis var. sinensis HOM05D002154 ORTHO05D002362 7.6e-10 67.0 62 48.4
CDE06G0517 Ceratophyllum demersum HOM05D002154 ORTHO05D002362 7.6e-10 67.0 59 52.5
Gohir.D07G013000 Gossypium hirsutum HOM05D002154 ORTHO05D002362 7.6e-10 67.0 68 47.1
MD02G1085100 Malus domestica HOM05D002154 ORTHO05D002362 7.6e-10 67.0 77 46.8
QL02p061823 Quercus lobata HOM05D002154 ORTHO05D002362 7.6e-10 67.0 65 46.2
Gorai.001G013700 Gossypium raimondii HOM05D002154 ORTHO05D002362 1.0e-09 66.6 68 45.6
CiPaw.03G211200 Carya illinoinensis HOM05D002154 ORTHO05D002362 1.7e-09 65.9 65 49.2
Gohir.A07G013200 Gossypium hirsutum HOM05D002154 ORTHO05D002362 1.7e-09 65.9 68 48.5
Thhalv10026187m.g Eutrema salsugineum HOM05D002154 ORTHO05D002362 2.2e-09 65.5 50 54.0
PGSC0003DMG400018003 Solanum tuberosum HOM05D002154 ORTHO05D002362 2.2e-09 65.5 57 54.4
Ah.09g231220 Amaranthus hybridus HOM05D002154 ORTHO05D002362 2.9e-09 65.1 65 47.7
Carub.0004s1481 Capsella rubella HOM05D002154 ORTHO05D002362 2.9e-09 65.1 69 44.9
PSO210G1180 Papaver somniferum HOM05D002154 ORTHO05D002362 2.9e-09 65.1 59 52.5
PSO210G2112 Papaver somniferum HOM05D002154 ORTHO05D002362 2.9e-09 65.1 59 52.5
Sed0015252 Sechium edule HOM05D002154 ORTHO05D002362 2.9e-09 65.1 73 45.2
TWI34G1491 Tripterygium wilfordii HOM05D002154 ORTHO05D002362 2.9e-09 65.1 75 44.0
Duzib150G0025 Durio zibethinus HOM05D002154 ORTHO05D002362 3.8e-09 64.7 55 54.5
Solyc07g041000.4 Solanum lycopersicum HOM05D002154 ORTHO05D002362 3.8e-09 64.7 51 54.9
Sopen07g020130 Solanum pennellii HOM05D002154 ORTHO05D002362 3.8e-09 64.7 51 54.9
BcaC09g51760 Brassica carinata HOM05D002154 ORTHO05D002362 5.0e-09 64.3 50 54.0
Eucgr.C03406 Eucalyptus grandis HOM05D002154 ORTHO05D002362 5.0e-09 64.3 55 50.9
Thecc.09G083000 Theobroma cacao HOM05D002154 ORTHO05D002362 5.0e-09 64.3 75 44.0
AUR62025112 Chenopodium quinoa HOM05D002154 ORTHO05D002362 6.5e-09 63.9 66 45.5
AT4G29820 Arabidopsis thaliana HOM05D002154 ORTHO05D002362 8.4e-09 63.5 58 50.0
COL.COLO4_18157 Corchorus olitorius HOM05D002154 ORTHO05D002249 8.4e-09 63.5 77 44.2
MELO3C004637.2 Cucumis melo HOM05D002154 ORTHO05D002362 8.4e-09 63.5 50 56.0
CsaV3_2G001320 Cucumis sativus L. HOM05D002154 ORTHO05D002362 8.4e-09 63.5 73 45.2
Gohir.D05G033500 Gossypium hirsutum HOM05D002154 ORTHO05D002362 8.4e-09 63.5 61 49.2
Gorai.009G033900 Gossypium raimondii HOM05D002154 ORTHO05D002362 8.4e-09 63.5 61 49.2
EL10Ac8g19158 Beta vulgaris HOM05D002154 ORTHO05D002362 1.1e-08 63.2 60 48.3
Gohir.A05G032000 Gossypium hirsutum HOM05D002154 ORTHO05D002362 1.1e-08 63.2 66 47.0
THA.LOC104820017 Tarenaya hassleriana HOM05D002154 ORTHO05D002362 1.1e-08 63.2 70 44.3
Aa31LG2G20720 Aethionema arabicum HOM05D002154 ORTHO05D002362 1.4e-08 62.8 50 52.0
ClCG11G001630 Citrullus lanatus HOM05D002154 ORTHO05D002362 1.4e-08 62.8 73 43.8
Aqoxy7G04013 Aquilegia oxysepala HOM05D002154 ORTHO05D002362 1.9e-08 62.4 55 52.7
BraA01t00782Z Brassica rapa HOM05D002154 ORTHO05D002362 1.9e-08 62.4 55 49.1
A01p08340 Brassica napus HOM05D002154 ORTHO05D002362 2.5e-08 62.0 50 52.0
C01p09380 Brassica napus HOM05D002154 ORTHO05D002362 2.5e-08 62.0 50 52.0
BolC1t00926H Brassica oleracea HOM05D002154 ORTHO05D002362 2.5e-08 62.0 50 52.0
Cfa003045 Carpinus fangiana HOM05D002154 ORTHO05D002362 2.5e-08 62.0 70 44.3
CARHR237720 Cardamine hirsuta HOM05D002154 ORTHO05D002362 3.2e-08 61.6 50 54.0
MBI11_g07531_MAGBIO Magnolia biondii HOM05D002154 ORTHO05D002362 3.2e-08 61.6 76 43.4
Aqoxy7G04016 Aquilegia oxysepala HOM05D002154 ORTHO05D031247 5.5e-08 60.8 54 51.9
AL7G22430 Arabidopsis lyrata HOM05D002154 ORTHO05D002362 5.5e-08 60.8 53 50.9
PGR044G1609 Punica granatum HOM05D002154 ORTHO05D002362 5.5e-08 60.8 67 46.3
Actinidia38459 Actinidia chinensis HOM05D002154 ORTHO05D002362 7.1e-08 60.5 67 44.8
Nitab4.5_0002079g0020 Nicotiana tabacum HOM05D002154 ORTHO05D002362 7.1e-08 60.5 50 50.0
Sc08g0008670 Simmondsia chinensis HOM05D002154 ORTHO05D002362 7.1e-08 60.5 80 41.2
unitig_699.g19289 Utricularia gibba HOM05D002154 ORTHO05D002362 7.1e-08 60.5 54 48.1
SalBow1G0498 Salvia bowleyana HOM05D002154 ORTHO05D002362 9.3e-08 60.1 74 43.2
Migut.L01529 Erythranthe guttata HOM05D002154 ORTHO05D002362 1.2e-07 59.7 70 44.3
DCAR_028282 Daucus carota HOM05D002154 ORTHO05D002362 2.1e-07 58.9 64 45.3
SGA_v2.0_scaffold21G09443 Striga asiatica HOM05D002154 ORTHO05D002362 3.5e-07 58.2 61 45.9
GSVIVG01015153001 Vitis vinifera HOM05D002154 ORTHO05D002362 7.9e-07 57.0 63 42.9
Sp7g27630 Schrenkiella parvula HOM05D002154 ORTHO05D002362 1.0e-06 56.6 50 48.0
ECA240G0763 Erigeron canadensis HOM05D002154 ORTHO05D002362 3.9e-06 54.7 71 45.1
ATR0051G051 Amborella trichopoda HOM05D002154 ORTHO05D002362 5.1e-06 54.3 53 47.2
Mapoly0030s0108 Marchantia polymorpha HOM05D002154 ORTHO05D002362 5.1e-06 54.3 50 50.0
Pp3c8_3770 Physcomitrium patens HOM05D002154 ORTHO05D002362 5.1e-06 54.3 50 50.0
Cpa.g.sc371.3 Carica papaya HOM05D002154 ORTHO05D002362 8.7e-06 53.5 69 40.6


User provided reference genes

Program Settings