Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17852 Trifolium pratense HOM05D005508 ORTHO05D006882 1.2e-129 466.5 233 100.0
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 2.3e-107 392.5 226 88.1
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 9.2e-101 370.5 223 83.9
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 5.9e-100 367.9 225 83.1
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 3.9e-99 365.2 229 83.0
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 2.5e-98 362.5 225 80.9
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 1.4e-93 346.7 225 76.9
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 9.2e-93 344.0 226 75.7
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 1.2e-92 343.6 225 75.6
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 1.2e-92 343.6 225 76.0
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 2.7e-92 342.4 225 76.4
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 7.8e-92 340.9 225 75.1
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 2.5e-90 335.9 222 75.7
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 3.3e-90 335.5 224 77.2
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 2.8e-89 332.4 225 73.8
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 3.6e-81 305.4 219 67.6
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 1.1e-80 303.9 221 67.4
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 3.1e-80 302.4 222 67.1
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 4.0e-80 302.0 221 68.3
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 5.2e-80 301.6 222 67.1
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 6.8e-80 301.2 225 66.2
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 1.2e-79 300.4 215 67.9
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 1.2e-79 300.4 225 66.2
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 2.0e-79 299.7 225 65.8
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 2.0e-79 299.7 225 65.8
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 4.4e-79 298.5 215 67.4
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 2.9e-78 295.8 220 67.3
Cfa007661 Carpinus fangiana HOM05D005508 ORTHO05D006882 3.8e-78 295.4 215 67.9
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 6.4e-78 294.7 218 63.8
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 6.4e-78 294.7 220 66.4
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 5.4e-77 291.6 218 65.6
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 7.1e-77 291.2 215 65.6
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 7.1e-77 291.2 225 64.9
Nn4g23404 Nelumbo nucifera HOM05D005508 ORTHO05D006882 7.1e-77 291.2 218 63.3
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 7.1e-77 291.2 213 66.7
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 9.2e-77 290.8 221 64.3
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 6.0e-76 288.1 244 59.8
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 7.8e-76 287.7 223 65.0
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 1.7e-75 286.6 218 66.1
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 2.3e-75 286.2 222 63.5
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 2.3e-75 286.2 218 65.1
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 3.0e-75 285.8 219 63.5
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 3.9e-75 285.4 219 65.3
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 3.9e-75 285.4 222 64.4
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 6.6e-75 284.6 218 65.1
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 6.6e-75 284.6 225 61.8
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 6.6e-75 284.6 219 63.9
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 1.9e-74 283.1 217 66.4
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 1.9e-74 283.1 223 63.7
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 1.9e-74 283.1 220 65.5
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 4.3e-74 282.0 231 62.8
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 5.6e-74 281.6 217 65.9
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 9.6e-74 280.8 218 61.9
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 9.6e-74 280.8 218 66.1
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 9.6e-74 280.8 218 64.2
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 9.6e-74 280.8 222 62.6
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 1.2e-73 280.4 219 63.5
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 1.6e-73 280.0 218 65.1
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 2.1e-73 279.6 219 64.8
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 3.6e-73 278.9 218 63.8
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 6.2e-73 278.1 214 64.0
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 1.1e-72 277.3 218 63.8
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 1.4e-72 276.9 215 62.8
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 1.8e-72 276.6 215 63.3
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 4.0e-72 275.4 217 64.5
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 6.9e-72 274.6 218 64.2
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 6.9e-72 274.6 214 63.6
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 1.5e-71 273.5 217 64.1
FAN14G5804 Fragaria x ananassa HOM05D005508 ORTHO05D010430 1.5e-71 273.5 217 64.1
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 1.5e-71 273.5 221 60.6
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 5.8e-71 271.6 218 63.3
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 7.6e-71 271.2 218 64.2
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 1.3e-70 270.4 219 63.0
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 1.3e-70 270.4 218 65.1
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 1.7e-70 270.0 220 60.0
FAN02G1587 Fragaria x ananassa HOM05D005508 ORTHO05D010430 2.9e-70 269.2 224 62.1
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 1.1e-69 267.3 216 60.2
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 1.4e-69 266.9 200 66.5
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 1.9e-69 266.5 247 55.5
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 4.2e-69 265.4 268 53.7
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 7.1e-69 264.6 213 59.6
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 9.3e-69 264.2 222 58.6
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 1.2e-68 263.8 213 60.6
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 1.6e-68 263.5 221 59.3
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 1.7e-67 260.0 222 57.7
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 5.1e-67 258.5 217 58.1
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 1.1e-66 257.3 222 57.2
Lsat_1_v5_gn_5_138080 Lactuca sativa HOM05D005508 ORTHO05D006882 1.1e-66 257.3 217 61.3
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 7.3e-66 254.6 169 74.0
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 7.3e-66 254.6 216 59.3
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 1.1e-64 250.8 250 51.6
TAR622G1292 Trochodendron aralioides HOM05D005508 ORTHO05D006882 4.0e-64 248.8 214 58.4
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 1.5e-63 246.9 216 56.9
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 3.4e-63 245.7 218 59.2
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 5.8e-63 245.0 215 55.8
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 2.9e-62 242.7 213 58.2
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 3.8e-62 242.3 217 54.8
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 8.4e-62 241.1 228 57.0
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 6.0e-60 235.0 225 56.0
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 1.3e-59 233.8 226 54.0
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 3.0e-59 232.6 211 55.5
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 8.7e-59 231.1 217 55.8
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 3.7e-57 225.7 211 53.6
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 4.8e-57 225.3 179 62.6
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 6.2e-57 224.9 243 50.2
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 5.3e-56 221.9 149 73.2
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 4.5e-55 218.8 157 65.6
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 1.3e-54 217.2 177 60.5
HPP92_025853 Vanilla planifolia HOM05D005508 ORTHO05D006882 2.2e-54 216.5 218 52.3
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 5.5e-53 211.8 231 48.1
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 2.1e-52 209.9 234 51.3
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 4.6e-52 208.8 196 53.1
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 6.5e-46 188.3 229 45.9
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 1.2e-44 184.1 221 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 5.7e-42 175.3 221 44.3
Lj2g0016184 Lotus japonicus HOM05D005508 ORTHO05D006882 2.6e-39 166.4 111 75.7
CBR_g18642 Chara braunii HOM05D005508 ORTHO05D006882 1.0e-38 164.5 182 48.4
TWI34G1701 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 3.8e-38 162.5 134 63.4
SMO172G0157 Selaginella moellendorffii HOM05D005508 ORTHO05D006882 4.6e-36 155.6 213 39.9
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 2.5e-34 149.8 225 38.7
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 2.9e-30 136.3 231 36.4
PRCOL_00003700 Prasinoderma coloniale HOM05D005508 ORTHO05D006882 1.1e-26 124.4 216 37.0
BraA08t32798Z Brassica rapa HOM05D005508 ORTHO05D006882 1.2e-12 77.8 82 54.9
SHI29392 Sapria himalayana HOM05D005508 ORTHO05D006882 4.0e-11 72.8 70 55.7
SGA_v2.0_scaffold113G31696 Striga asiatica HOM05D005508 ORTHO05D006882 8.8e-11 71.6 155 32.9
AUR62014946 Chenopodium quinoa HOM05D005508 ORTHO05D006882 5.7e-10 68.9 94 37.2


User provided reference genes

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