Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 3.7e-144 515.0 285 100.0
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.0e-141 506.9 284 98.6
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 3.3e-137 491.9 284 96.5
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 8.8e-130 467.2 284 91.5
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 5.7e-129 464.5 284 91.5
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 3.7e-128 461.8 284 92.6
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 5.0e-125 451.4 300 87.7
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 6.5e-125 451.1 284 90.1
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 4.7e-123 444.9 284 87.7
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-122 443.7 284 86.6
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 1.8e-122 443.0 284 88.7
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-122 442.6 269 93.7
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.3e-122 442.6 269 93.7
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 2.3e-122 442.6 284 87.7
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 3.0e-122 442.2 284 82.4
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 4.0e-122 441.8 284 87.3
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 4.0e-122 441.8 284 87.3
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 5.2e-122 441.4 284 88.4
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 6.8e-122 441.0 284 86.3
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.0e-121 439.5 284 86.3
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.4e-121 438.7 284 85.9
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 3.4e-121 438.7 284 87.7
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 9.8e-121 437.2 284 87.7
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 9.8e-121 437.2 284 86.3
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.3e-120 436.8 284 86.3
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.7e-120 436.4 284 85.9
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.7e-120 436.4 284 85.9
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.7e-120 436.4 284 87.0
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 1.7e-120 436.4 284 84.9
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.2e-120 436.0 284 85.2
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 2.2e-120 436.0 284 85.9
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.2e-120 436.0 284 86.3
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.8e-120 435.6 284 87.3
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.7e-120 435.3 284 86.6
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 4.8e-120 434.9 284 86.3
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 8.3e-120 434.1 283 86.6
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 8.3e-120 434.1 283 86.6
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.4e-119 433.3 284 84.9
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.4e-119 433.3 284 85.2
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 3.1e-119 432.2 284 87.3
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.1e-119 432.2 284 77.8
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 5.4e-119 431.4 285 81.8
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 5.4e-119 431.4 285 82.1
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.0e-118 429.5 285 80.7
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.7e-118 429.1 284 85.6
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 3.5e-118 428.7 285 83.9
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 4.5e-118 428.3 294 83.7
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 4.5e-118 428.3 284 85.6
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 5.9e-118 427.9 285 83.2
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 5.9e-118 427.9 284 85.6
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 7.7e-118 427.6 285 83.5
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 7.7e-118 427.6 284 84.5
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 7.7e-118 427.6 284 85.9
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.3e-117 426.8 284 84.2
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.7e-117 426.4 284 84.5
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 2.3e-117 426.0 284 85.9
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.1e-116 423.7 284 83.8
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.5e-116 423.3 284 82.4
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.5e-116 423.3 268 90.7
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.5e-116 422.5 284 84.5
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 3.3e-116 422.2 284 83.5
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 5.5e-116 421.4 284 80.6
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 7.2e-116 421.0 284 83.1
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.2e-115 420.2 308 79.5
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.6e-115 419.9 284 83.5
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 2.8e-115 419.1 284 85.2
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 4.7e-115 418.3 292 81.2
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.1e-115 417.9 284 83.1
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 6.1e-115 417.9 284 83.1
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 8.0e-115 417.5 284 83.8
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.0e-114 417.2 294 80.6
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 1.0e-114 417.2 284 84.5
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 1.0e-114 417.2 284 84.5
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.8e-114 416.4 320 75.6
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 2.3e-114 416.0 284 83.1
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.3e-114 416.0 284 84.2
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.3e-114 416.0 284 84.2
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 3.0e-114 415.6 285 82.8
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 3.0e-114 415.6 285 82.8
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 4.0e-114 415.2 294 80.3
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 4.0e-114 415.2 277 85.2
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 5.2e-114 414.8 285 82.5
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.5e-113 413.3 305 79.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.0e-113 412.9 284 77.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 3.4e-113 412.1 302 80.5
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 3.4e-113 412.1 302 80.5
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 3.4e-113 412.1 284 81.3
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 5.7e-113 411.4 285 82.1
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 9.8e-113 410.6 277 83.0
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.2e-112 409.5 298 80.2
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 4.9e-112 408.3 278 82.7
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 4.9e-112 408.3 284 81.3
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 6.3e-112 407.9 268 84.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 7.0e-111 404.4 284 81.3
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 7.0e-111 404.4 316 75.6
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 4.5e-110 401.7 268 87.3
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 5.9e-110 401.4 286 82.2
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 7.8e-110 401.0 284 81.3
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.5e-108 396.7 314 74.5
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 4.3e-108 395.2 296 79.4
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 7.3e-108 394.4 284 77.5
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.6e-107 392.1 227 85.0
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 4.7e-107 391.7 227 85.0
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.2e-103 379.0 284 77.8
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.4e-103 378.3 284 78.2
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.5e-100 370.2 252 85.7
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.9e-100 369.8 285 77.2
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.6e-99 365.5 313 72.2
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.6e-99 365.5 313 72.2
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 3.0e-93 345.9 280 77.1
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.3e-92 342.0 284 73.2
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 7.3e-92 341.3 460 51.5
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.2e-91 340.5 299 70.2
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.5e-81 307.0 147 96.6
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 5.8e-81 305.1 221 83.7
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 5.4e-79 298.5 284 66.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.5e-78 295.8 286 68.2
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.1e-74 284.3 266 69.5
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 2.6e-73 279.6 329 48.9
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 5.8e-73 278.5 221 73.3
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 9.9e-73 277.7 283 57.2
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 5.4e-71 271.9 267 68.9
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 8.7e-69 264.6 202 83.2
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 2.1e-67 260.0 175 76.0
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 6.9e-58 228.4 283 49.1
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.5e-54 216.1 116 87.1
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 6.3e-43 178.7 82 98.8
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.9e-40 169.9 91 91.2
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.4e-39 167.5 158 72.8
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 2.5e-23 113.6 55 100.0
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.2e-19 100.5 45 100.0
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.8e-18 97.4 205 29.3
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 3.5e-17 93.2 112 54.5
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 8.5e-16 88.6 243 27.2
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.7e-14 83.6 64 64.1
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.0e-13 79.7 39 92.3
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 7.5e-12 75.5 41 90.2
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.8e-11 73.6 54 66.7
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.1e-10 71.6 127 56.7
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.4e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.2e-09 68.2 30 93.3
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 5.0e-08 62.8 32 100.0
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 3.2e-07 60.1 32 93.8


User provided reference genes

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