Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 1.6e-193 679.5 403 100.0
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 1.1e-136 490.7 531 55.2
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 6.6e-123 444.9 525 51.2
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 6.6e-123 444.9 525 51.2
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 1.3e-113 414.1 533 47.5
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 7.6e-111 404.8 529 54.4
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.1e-109 401.0 528 46.6
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 2.3e-107 393.3 527 46.1
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 4.3e-106 389.0 532 47.7
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 9.3e-101 371.3 520 53.5
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 7.9e-100 368.2 546 53.7
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 6.7e-99 365.2 516 54.7
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 4.0e-96 355.9 528 43.9
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 9.0e-96 354.8 458 58.1
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.2e-95 354.4 523 54.1
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 2.6e-95 353.2 515 53.6
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 3.4e-95 352.8 520 46.7
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 5.8e-95 352.1 515 53.4
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 1.0e-94 351.3 515 53.2
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.3e-94 350.9 546 50.9
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 1.7e-94 350.5 515 53.2
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.9e-94 349.7 517 53.2
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 2.9e-94 349.7 524 43.7
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 8.4e-94 348.2 527 44.0
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 1.1e-93 347.8 519 52.4
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 4.2e-93 345.9 547 50.5
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 4.2e-93 345.9 552 51.6
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 5.5e-93 345.5 517 53.0
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 7.1e-93 345.1 545 50.6
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 1.6e-92 344.0 520 51.5
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.1e-92 343.6 547 50.3
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 2.7e-92 343.2 527 43.5
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 4.6e-92 342.4 520 52.1
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 4.6e-92 342.4 551 45.6
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 4.6e-92 342.4 525 43.0
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 6.0e-92 342.0 520 51.3
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 7.9e-92 341.7 544 45.2
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.3e-91 340.9 521 44.9
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 3.0e-91 339.7 414 48.1
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.9e-91 339.3 521 42.6
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 4.3e-90 335.9 546 51.1
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 3.7e-89 332.8 529 50.3
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 3.7e-89 332.8 529 50.3
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 1.4e-88 330.9 523 42.1
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 2.4e-88 330.1 522 45.8
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 9.0e-88 328.2 521 41.8
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 9.0e-88 328.2 518 46.3
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.4e-87 326.2 484 53.7
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 3.8e-86 322.8 519 39.5
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 2.1e-84 317.0 518 39.2
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 4.6e-84 315.8 516 41.1
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 4.6e-84 315.8 516 41.1
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 1.0e-83 314.7 522 39.7
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 1.8e-83 313.9 526 41.4
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 2.3e-83 313.5 528 49.1
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 6.7e-83 312.0 516 40.5
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 3.3e-82 309.7 522 49.4
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 5.7e-82 308.9 528 39.6
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 2.8e-81 306.6 525 40.6
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 3.7e-81 306.2 527 41.0
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 3.7e-81 306.2 527 41.2
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.4e-80 304.3 527 47.1
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.4e-80 303.5 515 38.3
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 6.9e-80 302.0 516 47.9
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 6.9e-80 302.0 522 38.3
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 9.1e-80 301.6 481 42.8
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.6e-79 300.1 527 41.4
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 5.9e-79 298.9 520 37.5
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 7.7e-79 298.5 520 37.7
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.3e-78 297.7 520 37.5
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 1.7e-78 297.4 513 37.6
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 1.7e-78 297.4 522 47.7
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.7e-78 297.4 527 38.3
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 2.2e-78 297.0 525 38.1
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 3.8e-78 296.2 514 37.5
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 5.0e-78 295.8 530 40.2
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 5.0e-78 295.8 525 47.8
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 8.5e-78 295.0 515 39.6
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 1.4e-77 294.3 519 37.8
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 1.4e-77 294.3 529 37.6
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 1.9e-77 293.9 520 37.7
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.9e-77 293.9 528 47.2
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 7.2e-77 292.0 528 46.8
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.7e-76 290.0 525 47.0
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 5.7e-74 282.3 540 37.2
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 2.2e-73 280.4 530 45.1
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 1.1e-72 278.1 534 45.5
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.4e-72 277.7 535 37.0
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 3.1e-72 276.6 482 37.8
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 5.3e-72 275.8 503 38.4
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.0e-70 271.6 521 38.0
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 6.5e-70 268.9 525 45.3
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.1e-69 268.1 492 47.8
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 1.9e-69 267.3 525 45.3
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 2.5e-69 266.9 537 35.9
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 9.4e-69 265.0 524 44.1
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 3.6e-68 263.1 481 36.2
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 8.0e-68 261.9 523 44.9
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 3.9e-67 259.6 534 35.6
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 7.0e-64 248.8 529 32.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 3.5e-63 246.5 506 42.7
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 1.3e-62 244.6 498 36.1
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 8.5e-62 241.9 510 34.9
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 4.0e-59 233.0 490 36.1
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 6.7e-59 232.3 167 70.7
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 7.7e-55 218.8 518 32.0
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 3.4e-50 203.4 173 59.5
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 3.5e-47 193.4 525 29.1
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.7e-46 191.0 167 55.1
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 4.9e-41 172.9 308 38.3
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 2.2e-33 147.5 522 26.2
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 2.9e-33 147.1 511 29.2
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 6.4e-33 146.0 526 32.9
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 6.0e-31 139.4 101 70.3
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 3.6e-28 130.2 102 65.7
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.6e-26 124.0 150 46.7
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 7.0e-24 115.9 116 50.9
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 3.9e-22 110.2 501 24.8
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.1e-21 108.6 103 51.5
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 1.8e-19 101.3 137 43.1
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.6e-18 97.4 136 41.9
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 2.9e-17 94.0 157 39.5
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 2.4e-16 90.9 140 40.0
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 9.2e-16 89.0 157 38.2
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 1.1e-13 82.0 96 46.9
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 1.9e-13 81.3 70 61.4
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 8.1e-12 75.9 158 31.6
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 2.6e-10 70.9 99 43.4
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.3e-09 68.6 134 33.6
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.7e-09 68.2 70 45.7
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.4e-08 65.1 100 39.0
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.2e-08 63.9 83 47.0
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 3.2e-08 63.9 55 58.2
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 7.1e-08 62.8 95 37.9


User provided reference genes

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