Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 1.7e-171 605.9 297 100.0
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 4.2e-149 531.6 440 65.9
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 5.5e-149 531.2 440 65.5
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 5.5e-149 531.2 440 65.5
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 7.9e-148 527.3 440 65.0
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 3.4e-143 511.9 438 63.2
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 1.6e-140 503.1 434 62.9
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 1.6e-140 503.1 433 62.8
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 3.0e-139 498.8 434 62.7
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 3.9e-139 498.4 434 62.9
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 6.7e-139 497.7 435 61.1
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 6.7e-139 497.7 434 62.0
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 5.7e-138 494.6 435 60.7
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 1.1e-133 480.3 434 59.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 4.2e-133 478.4 434 58.3
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 7.2e-133 477.6 434 58.1
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 1.2e-132 476.9 434 59.2
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 2.7e-132 475.7 434 57.8
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 1.0e-131 473.8 437 57.0
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 1.8e-131 473.0 434 57.6
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 6.7e-131 471.1 434 58.5
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 1.1e-130 470.3 438 57.1
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 2.5e-130 469.2 436 56.9
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 2.5e-130 469.2 434 57.8
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 2.5e-130 469.2 434 57.1
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 5.7e-130 468.0 436 57.6
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 1.3e-129 466.8 434 56.9
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 2.8e-129 465.7 430 57.2
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 3.7e-129 465.3 429 56.4
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 6.3e-129 464.5 433 57.7
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 8.2e-129 464.2 426 58.5
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 1.4e-128 463.4 434 56.0
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.8e-128 463.0 434 56.5
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 2.4e-128 462.6 431 56.6
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 3.1e-128 462.2 433 57.0
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 1.5e-127 459.9 435 56.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 2.0e-127 459.5 431 57.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 2.0e-127 459.5 433 56.8
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 2.6e-127 459.1 453 54.1
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 3.4e-127 458.8 434 56.2
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 4.5e-127 458.4 434 55.3
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 7.7e-127 457.6 431 56.8
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 1.0e-126 457.2 431 56.4
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 1.0e-126 457.2 431 56.4
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 1.3e-126 456.8 439 56.7
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 2.2e-126 456.1 432 56.9
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 3.8e-126 455.3 434 56.0
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 6.5e-126 454.5 435 55.6
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 8.5e-126 454.1 431 56.8
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 8.5e-126 454.1 433 55.4
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.2e-125 451.1 434 55.8
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 1.6e-124 449.9 434 54.6
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 3.6e-124 448.7 463 54.2
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 7.9e-124 447.6 453 52.5
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.0e-123 447.2 453 52.8
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 1.8e-123 446.4 453 52.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.8e-123 446.4 434 55.8
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.8e-123 446.4 435 56.3
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 2.3e-123 446.0 453 53.0
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 3.0e-123 445.7 453 52.5
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 5.1e-123 444.9 435 54.7
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 6.7e-123 444.5 453 53.0
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 2.0e-122 443.0 433 55.0
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 2.0e-122 443.0 430 55.3
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 2.6e-122 442.6 430 55.6
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 3.3e-122 442.2 453 52.5
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 3.3e-122 442.2 453 52.5
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 3.3e-122 442.2 453 52.5
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 3.3e-122 442.2 453 52.1
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 5.7e-122 441.4 453 52.5
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 5.7e-122 441.4 453 52.5
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 9.7e-122 440.7 431 55.0
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 1.3e-121 440.3 431 54.8
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-121 439.1 431 54.5
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 6.3e-121 438.0 431 54.5
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 1.1e-120 437.2 484 49.8
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.4e-120 436.0 493 49.7
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 3.1e-120 435.6 430 54.4
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 4.1e-120 435.3 434 53.9
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.6e-119 432.6 493 49.3
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 2.9e-118 429.1 453 52.5
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 4.7e-116 421.8 501 47.7
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 6.1e-116 421.4 405 55.6
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.0e-115 420.6 434 52.8
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 1.0e-115 420.6 434 53.0
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 3.0e-115 419.1 438 52.3
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 1.5e-114 416.8 431 52.0
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.0e-114 416.4 431 52.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.4e-112 410.2 416 55.0
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 3.8e-110 402.1 431 51.0
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 5.0e-110 401.7 431 52.0
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 5.0e-110 401.7 428 50.0
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.4e-107 393.7 432 49.3
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 3.1e-104 382.5 444 46.6
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 4.0e-99 365.5 428 45.8
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 7.5e-98 361.3 428 45.6
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 2.2e-89 333.2 355 51.3
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 6.3e-89 331.6 428 43.0
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 5.9e-87 325.1 342 54.4
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 3.8e-86 322.4 350 52.0
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 8.6e-86 321.2 341 52.8
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 5.8e-82 308.5 373 49.9
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 1.1e-80 304.3 333 52.3
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 6.0e-79 298.5 466 39.1
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.9e-78 295.8 336 50.3
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 3.6e-76 289.3 178 78.7
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.4e-72 277.3 179 76.5
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.5e-61 240.0 180 66.1
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 4.2e-56 222.6 126 78.6
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 1.0e-54 218.0 274 48.2
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 8.7e-54 214.9 327 37.0
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 8.7e-54 214.9 447 32.7
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.9e-53 213.8 317 39.4
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 5.3e-51 205.7 126 72.2
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.2e-49 200.3 96 100.0
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 7.6e-42 175.3 338 39.6
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 6.4e-41 172.2 422 27.3
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.0e-38 164.9 275 40.4
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.2e-34 151.4 99 73.7
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 5.1e-30 136.0 85 77.6
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 3.3e-29 133.3 227 36.1
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 5.6e-29 132.5 87 73.6
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 4.6e-23 112.8 114 44.7
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 3.9e-22 109.8 77 71.4
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 8.7e-22 108.6 66 75.8
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 7.4e-21 105.5 57 84.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.2e-15 88.2 52 78.8
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 3.6e-15 86.7 52 76.9
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 1.5e-13 81.3 42 97.6
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 7.4e-13 79.0 87 49.4
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 7.4e-13 79.0 87 49.4
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 1.4e-11 74.7 79 53.2
Psat0s1135g0040 Pisum sativum HOM05D002140 ORTHO05D019229 6.1e-07 59.3 31 90.3
Lsat_1_v5_gn_5_118461 Lactuca sativa HOM05D001336 ORTHO05D001211 7.9e-07 58.9 41 70.7


User provided reference genes

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