Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 1.1e-107 393.3 194 100.0
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 2.8e-103 378.6 194 93.8
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 4.8e-103 377.9 194 93.8
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 2.6e-101 372.1 187 96.8
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 1.7e-100 369.4 194 90.7
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 1.6e-98 362.8 194 89.2
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.1e-98 362.5 194 88.7
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 6.1e-98 360.9 194 87.1
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 6.1e-98 360.9 194 89.7
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 1.3e-97 359.8 194 87.6
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.5e-96 356.3 194 89.7
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 3.3e-96 355.1 194 86.6
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 4.3e-96 354.8 194 89.2
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 5.7e-96 354.4 194 88.7
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 7.4e-96 354.0 193 87.6
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 1.6e-95 352.8 194 85.1
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.6e-95 352.8 194 87.1
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 2.2e-95 352.4 194 85.1
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 3.7e-95 351.7 194 86.1
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 4.8e-95 351.3 194 86.6
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 8.2e-95 350.5 194 87.1
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 1.1e-94 350.1 194 84.5
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 85.1
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 85.1
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 1.4e-94 349.7 194 85.1
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 85.1
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 84.0
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 84.5
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 2.4e-94 349.0 194 86.6
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 6.9e-94 347.4 194 84.0
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 1.5e-93 346.3 194 84.5
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 2.0e-93 345.9 194 84.5
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 84.5
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 5.9e-93 344.4 194 84.0
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 7.7e-93 344.0 194 84.5
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 1.3e-92 343.2 194 84.0
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 82.5
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 3.8e-92 341.7 194 83.0
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 6.5e-92 340.9 194 83.0
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 82.0
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 8.5e-92 340.5 194 83.5
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 84.0
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.1e-91 340.1 194 83.5
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 3.2e-91 338.6 194 82.5
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 5.5e-91 337.8 200 81.5
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 82.0
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.2e-90 336.7 194 83.0
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 2.1e-90 335.9 194 81.4
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 2.7e-90 335.5 194 80.4
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 82.0
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 6.1e-90 334.3 194 82.0
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 7.9e-90 334.0 194 80.4
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 7.9e-90 334.0 194 80.4
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 7.9e-90 334.0 194 79.9
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 1.0e-89 333.6 194 80.9
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 79.9
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 79.9
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 79.9
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.8e-89 332.8 194 79.9
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.4
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 2.3e-89 332.4 194 80.4
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 3.0e-89 332.0 194 79.9
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 3.0e-89 332.0 194 80.4
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 5.1e-89 331.3 195 81.5
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 5.1e-89 331.3 194 81.4
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 5.1e-89 331.3 194 81.4
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 6.7e-89 330.9 194 79.9
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 8.8e-89 330.5 194 82.0
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 1.1e-88 330.1 194 79.4
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.5e-88 329.7 194 80.9
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 2.0e-88 329.3 214 75.7
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 3.3e-88 328.6 194 79.4
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 9.7e-88 327.0 225 72.0
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 9.7e-88 327.0 194 79.9
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 2.8e-87 325.5 188 81.4
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 3.7e-87 325.1 194 78.4
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 3.7e-87 325.1 214 74.3
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 4.8e-87 324.7 210 75.2
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 4.8e-87 324.7 235 69.4
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 8.2e-87 323.9 214 74.3
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.4e-86 322.4 194 77.8
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 2.4e-86 322.4 187 81.3
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 5.9e-85 317.8 194 74.7
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 2.5e-83 312.4 178 80.3
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 1.6e-82 309.7 193 77.2
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 7.9e-82 307.4 177 81.9
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 1.4e-81 306.6 194 77.3
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 3.0e-81 305.4 210 71.9
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.1e-80 303.5 194 75.3
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 2.0e-80 302.8 194 72.2
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 2.0e-80 302.8 194 75.8
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 3.3e-80 302.0 173 80.3
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 5.7e-80 301.2 161 91.3
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 5.7e-80 301.2 297 54.9
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 2.8e-79 298.9 194 71.1
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 1.8e-78 296.2 194 70.1
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 3.1e-78 295.4 194 69.6
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 5.3e-78 294.7 194 70.1
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 9.1e-78 293.9 274 59.1
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 4.5e-77 291.6 195 67.2
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.9e-75 286.2 162 82.7
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 2.3e-73 279.3 283 54.4
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 3.3e-72 275.4 160 81.9
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 2.7e-69 265.8 172 70.3
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 2.6e-56 222.6 120 88.3
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.3e-55 220.3 120 85.8
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 4.9e-55 218.4 134 77.6
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.1e-54 215.3 137 75.2
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 6.6e-52 208.0 123 79.7
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 3.3e-51 205.7 178 54.5
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 5.6e-51 204.9 123 77.2
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.8e-50 202.6 121 77.7
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 5.7e-48 194.9 191 48.7
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 8.3e-47 191.0 114 78.9
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 5.4e-46 188.3 114 76.3
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.7e-44 183.3 112 75.0
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 7.5e-40 167.9 93 84.9
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.3e-39 167.2 122 63.9
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.1e-38 164.1 99 77.8
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 1.4e-38 163.7 173 49.7
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.3e-36 157.1 89 84.3
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.3e-33 146.4 179 41.9
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 1.3e-31 140.6 76 84.2
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 6.4e-31 138.3 73 84.9
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 1.1e-30 137.5 88 76.1
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 1.1e-30 137.5 88 76.1
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 1.2e-29 134.0 73 83.6
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 1.2e-29 134.0 73 83.6
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 1.2e-29 134.0 73 83.6
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.2e-29 134.0 71 85.9
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.1e-25 120.9 64 85.9
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 5.1e-20 102.1 74 66.2
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.1e-17 94.4 60 75.0
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.6e-13 80.5 83 49.4
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.6e-13 80.5 83 49.4
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 6.0e-13 78.6 94 47.9
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.3e-12 77.4 55 69.1
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 7.3e-11 71.6 40 82.5
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 2.1e-10 70.1 93 41.9
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 4.0e-09 65.9 56 58.9


User provided reference genes

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