Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.1e-51 206.5 111 100.0
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 1.7e-44 182.6 122 83.6
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.4e-35 152.1 105 82.9
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.1e-34 149.1 107 74.8
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.9e-34 147.1 107 73.8
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.8e-33 146.0 108 78.7
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.9e-32 142.5 108 77.8
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 2.5e-32 142.1 108 76.9
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.5e-32 142.1 108 76.9
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 2.5e-32 142.1 108 76.9
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.3e-32 141.7 108 76.9
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 3.3e-32 141.7 108 76.9
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.3e-32 141.4 108 76.9
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 4.3e-32 141.4 108 76.9
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 5.6e-32 141.0 108 76.9
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 5.6e-32 141.0 108 76.9
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 5.6e-32 141.0 108 76.9
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 5.6e-32 141.0 108 76.9
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 7.4e-32 140.6 108 76.9
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.4e-32 140.6 108 76.9
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 7.4e-32 140.6 108 76.9
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 7.4e-32 140.6 108 76.9
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.4e-32 140.6 108 75.9
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 9.6e-32 140.2 108 76.9
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 9.6e-32 140.2 108 76.9
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 9.6e-32 140.2 108 76.9
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 9.6e-32 140.2 108 75.9
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 9.6e-32 140.2 108 75.9
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 9.6e-32 140.2 108 76.9
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.3e-31 139.8 108 75.9
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.3e-31 139.8 108 75.9
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.6e-31 139.4 108 75.9
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.6e-31 139.4 108 75.9
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 2.1e-31 139.0 108 75.9
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.1e-31 139.0 108 75.9
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 2.1e-31 139.0 108 75.9
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 2.1e-31 139.0 108 75.9
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.8e-31 138.7 108 75.9
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.7e-31 138.3 108 75.9
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 3.7e-31 138.3 108 74.1
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 3.7e-31 138.3 108 75.9
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 3.7e-31 138.3 108 75.0
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 3.7e-31 138.3 108 74.1
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 3.7e-31 138.3 108 74.1
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.7e-31 138.3 108 75.0
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 3.7e-31 138.3 108 75.0
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 4.8e-31 137.9 108 75.0
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 4.8e-31 137.9 108 75.0
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 4.8e-31 137.9 108 75.0
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.8e-31 137.9 108 75.0
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 4.8e-31 137.9 108 75.0
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 75.9
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 75.0
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 74.1
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 6.2e-31 137.5 108 75.0
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 8.1e-31 137.1 108 75.0
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 8.1e-31 137.1 108 74.1
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 8.1e-31 137.1 108 73.1
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 8.1e-31 137.1 108 71.3
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 75.9
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 74.1
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 75.0
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 75.0
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 74.1
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 73.1
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 74.1
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 74.1
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 1.1e-30 136.7 108 73.1
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.4e-30 136.3 108 73.1
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.4e-30 136.3 108 74.1
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.4e-30 136.3 108 74.1
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.4e-30 136.3 108 74.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.4e-30 136.3 108 74.1
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 1.4e-30 136.3 108 73.1
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.8e-30 136.0 108 74.1
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 1.8e-30 136.0 108 73.1
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.8e-30 136.0 108 73.1
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.8e-30 136.0 108 73.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.8e-30 136.0 108 73.1
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.8e-30 136.0 108 74.1
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.8e-30 136.0 108 74.1
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.8e-30 136.0 108 73.1
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 2.4e-30 135.6 108 74.1
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.4e-30 135.6 108 75.0
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.4e-30 135.6 108 73.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 2.4e-30 135.6 108 73.1
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 3.1e-30 135.2 108 73.1
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 3.1e-30 135.2 108 74.1
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 3.1e-30 135.2 106 74.5
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 3.1e-30 135.2 108 72.2
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 4.0e-30 134.8 108 73.1
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 4.0e-30 134.8 108 73.1
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.0e-30 134.8 108 73.1
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 5.3e-30 134.4 108 73.1
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 5.3e-30 134.4 108 73.1
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 5.3e-30 134.4 108 74.1
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.3e-30 134.4 108 74.1
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 5.3e-30 134.4 108 73.1
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 5.3e-30 134.4 108 73.1
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 5.3e-30 134.4 108 73.1
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.9e-30 134.0 108 73.1
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 6.9e-30 134.0 108 74.1
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 6.9e-30 134.0 108 73.1
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 6.9e-30 134.0 106 74.5
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 6.9e-30 134.0 108 72.2
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 6.9e-30 134.0 108 72.2
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.0e-30 133.7 108 74.1
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.2e-29 133.3 108 72.2
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.2e-29 133.3 108 71.3
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.2e-29 133.3 108 72.2
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-29 133.3 108 73.1
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-29 133.3 108 73.1
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.2e-29 133.3 108 70.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.5e-29 132.9 108 72.2
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.5e-29 132.9 108 72.2
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.5e-29 132.9 108 72.2
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.5e-29 132.9 108 72.2
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.5e-29 132.9 108 72.2
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.5e-29 132.9 108 72.2
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.0e-29 132.5 107 68.2
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.0e-29 132.5 108 70.4
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 2.0e-29 132.5 108 71.3
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.6e-29 132.1 108 70.4
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.6e-29 132.1 108 71.3
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 3.4e-29 131.7 108 72.2
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 3.4e-29 131.7 108 71.3
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 5.8e-29 131.0 108 72.2
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 7.6e-29 130.6 108 70.4
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 7.6e-29 130.6 122 63.1
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 7.6e-29 130.6 108 71.3
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 7.6e-29 130.6 108 63.9
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.3e-28 129.8 108 71.3
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.7e-28 129.4 108 71.3
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 2.2e-28 129.0 107 70.1
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.2e-28 129.0 111 55.0
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 2.9e-28 128.6 108 71.3
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 4.9e-28 127.9 107 60.7
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 6.4e-28 127.5 108 71.3
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 6.4e-28 127.5 108 65.7
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 6.4e-28 127.5 108 70.4
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 6.4e-28 127.5 108 70.4
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 8.4e-28 127.1 108 68.5
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.1e-27 126.7 108 69.4
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.4e-27 126.3 108 71.3
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 9.3e-27 123.6 108 67.6
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 3.5e-26 121.7 94 74.5
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 6.7e-25 117.5 141 56.0
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.1e-23 112.5 107 57.9
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 8.2e-23 110.5 108 59.3
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 1.7e-20 102.8 108 56.5
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.5e-20 100.9 106 59.4
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.1e-19 100.1 56 83.9
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.9e-19 99.4 112 58.9
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.9e-19 99.4 112 58.9
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.9e-19 99.4 83 71.1
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 2.7e-18 95.5 84 67.9
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 3.9e-17 91.7 67 67.2
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 4.3e-16 88.2 77 70.1
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 5.7e-16 87.8 82 67.1
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.2e-15 85.9 44 95.5
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 4.8e-15 84.7 75 54.7
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.8e-14 82.8 44 90.9
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 4.1e-14 81.6 45 88.9
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.2e-13 80.1 94 53.2
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 8.8e-09 63.9 41 80.5
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 2.8e-07 58.9 44 75.0


User provided reference genes

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