Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G14354 Trifolium pratense HOM05D001365 ORTHO05D051471 3.3e-33 144.4 71 100.0
TPR.G10213 Trifolium pratense HOM05D001365 ORTHO05D001291 9.9e-14 79.7 43 88.4
Glyma.12G064900 Glycine max HOM05D001365 ORTHO05D001291 1.3e-13 79.3 43 86.0
Glyma.11G141500 Glycine max HOM05D001365 ORTHO05D001291 4.1e-12 74.3 43 81.4
Medtr4g063557 Medicago truncatula HOM05D001365 ORTHO05D001291 4.1e-12 74.3 44 84.1
Psat7g218080 Pisum sativum HOM05D001365 ORTHO05D001291 7.1e-12 73.6 43 86.0
Ca_19185_v3 Cicer arietinum L. HOM05D001365 ORTHO05D001291 1.0e-10 69.7 43 79.1
arahy.Tifrunner.gnm1.ann1.CV46RI Arachis hypogaea HOM05D001365 ORTHO05D001291 1.7e-10 68.9 43 81.4
arahy.Tifrunner.gnm1.ann1.GS5YLT Arachis hypogaea HOM05D001365 ORTHO05D001291 1.7e-10 68.9 43 81.4
Lalb_Chr24g0394231 Lupinus albus HOM05D001365 ORTHO05D001291 3.9e-10 67.8 35 91.4
Phvul.011G066000 Phaseolus vulgaris HOM05D001365 ORTHO05D001291 8.6e-10 66.6 43 72.1
Phvul.L003743 Phaseolus vulgaris HOM05D001365 ORTHO05D001291 1.1e-09 66.2 43 79.1
VMungo1080G1188 Vigna mungo HOM05D001365 ORTHO05D001291 1.1e-09 66.2 36 88.9
Lalb_Chr14g0375041 Lupinus albus HOM05D001365 ORTHO05D001291 1.9e-09 65.5 35 85.7
Prupe.6G081700 Prunus persica HOM05D001365 ORTHO05D001291 3.3e-09 64.7 35 85.7
TAR636G0228 Trochodendron aralioides HOM05D001365 ORTHO05D001291 7.3e-09 63.5 35 82.9
Cpa.g.sc190.14 Carica papaya HOM05D001365 ORTHO05D001291 1.2e-08 62.8 34 82.4
Nn2g10421 Nelumbo nucifera HOM05D001365 ORTHO05D001291 1.2e-08 62.8 35 82.9
Lj3g0013964 Lotus japonicus HOM05D001365 ORTHO05D001291 1.6e-08 62.4 44 70.5
Sed0008125 Sechium edule HOM05D001365 ORTHO05D001291 1.6e-08 62.4 32 87.5
GSVIVG01025009001 Vitis vinifera HOM05D001365 ORTHO05D001291 1.6e-08 62.4 60 53.3
Solyc11g073280.2 Solanum lycopersicum HOM05D001365 ORTHO05D001291 2.1e-08 62.0 35 85.7
Sopen11g030910 Solanum pennellii HOM05D001365 ORTHO05D001291 2.1e-08 62.0 35 85.7
Glyma.13G334200 Glycine max HOM05D001365 ORTHO05D001291 4.7e-08 60.8 43 76.7
Gohir.D03G128500 Gossypium hirsutum HOM05D001365 ORTHO05D001291 4.7e-08 60.8 33 84.8
Gorai.003G135200 Gossypium raimondii HOM05D001365 ORTHO05D001291 4.7e-08 60.8 33 84.8
Duzib150G1022 Durio zibethinus HOM05D001365 ORTHO05D001291 8.1e-08 60.1 33 84.8
PGR102G3154 Punica granatum HOM05D001365 ORTHO05D001291 8.1e-08 60.1 34 79.4
Thecc.09G325800 Theobroma cacao HOM05D001365 ORTHO05D001291 8.1e-08 60.1 33 84.8
Duzib168G0023 Durio zibethinus HOM05D001365 ORTHO05D001291 1.1e-07 59.7 33 84.8
MD11G1143800 Malus domestica HOM05D001365 ORTHO05D001291 1.1e-07 59.7 37 75.7
RcHm_v2.0_Chr5g0063611 Rosa chinensis HOM05D001365 ORTHO05D001291 1.1e-07 59.7 55 56.4
PGSC0003DMG400035146 Solanum tuberosum HOM05D001365 ORTHO05D001291 1.1e-07 59.7 35 82.9
Atru.chr3.3837 Acer truncatum HOM05D001365 ORTHO05D001291 1.4e-07 59.3 45 71.1
Gorai.004G004300 Gossypium raimondii HOM05D001365 ORTHO05D001291 1.4e-07 59.3 33 81.8
Thecc.05G042800 Theobroma cacao HOM05D001365 ORTHO05D001291 1.4e-07 59.3 32 84.4
CSS0018018 Camellia sinensis var. sinensis HOM05D001365 ORTHO05D001291 1.8e-07 58.9 37 78.4
CSS0023231 Camellia sinensis var. sinensis HOM05D001365 ORTHO05D001291 1.8e-07 58.9 36 75.0
ClCG02G020360 Citrullus lanatus HOM05D001365 ORTHO05D001291 1.8e-07 58.9 32 81.2
Rhsim01G0225400 Rhododendron simsii HOM05D001365 ORTHO05D001291 1.8e-07 58.9 35 80.0
TAR633G2207 Trochodendron aralioides HOM05D001365 ORTHO05D001291 1.8e-07 58.9 34 79.4
MD03G1097200 Malus domestica HOM05D001365 ORTHO05D001291 3.1e-07 58.2 37 73.0
Nn2g12935 Nelumbo nucifera HOM05D001365 ORTHO05D001291 3.1e-07 58.2 35 74.3
Hund04989 Selenicereus undatus HOM05D001365 ORTHO05D001291 3.1e-07 58.2 32 87.5
MSTRG.12642 Avicennia marina HOM05D001365 ORTHO05D001291 4.0e-07 57.8 30 86.7
Gohir.A07G096200 Gossypium hirsutum HOM05D001365 ORTHO05D001291 4.0e-07 57.8 33 81.8
Gohir.D07G100600 Gossypium hirsutum HOM05D001365 ORTHO05D001291 4.0e-07 57.8 33 81.8
Gorai.001G108500 Gossypium raimondii HOM05D001365 ORTHO05D001291 4.0e-07 57.8 33 81.8
COL.COLO4_18470 Corchorus olitorius HOM05D001365 ORTHO05D001291 5.2e-07 57.4 33 78.8
MELO3C013685.2 Cucumis melo HOM05D001365 ORTHO05D001291 5.2e-07 57.4 32 81.2
CsaV3_6G017140 Cucumis sativus L. HOM05D001365 ORTHO05D001291 5.2e-07 57.4 32 81.2
Gohir.A03G039600 Gossypium hirsutum HOM05D001365 ORTHO05D001291 5.2e-07 57.4 33 81.8
SalBow2G1248 Salvia bowleyana HOM05D001365 ORTHO05D001291 5.2e-07 57.4 32 87.5
Aqoxy4G02984 Aquilegia oxysepala HOM05D001365 ORTHO05D001291 6.8e-07 57.0 36 77.8
CSS0023529 Camellia sinensis var. sinensis HOM05D001365 ORTHO05D001291 6.8e-07 57.0 38 73.7
CSS0032759 Camellia sinensis var. sinensis HOM05D001365 ORTHO05D001291 6.8e-07 57.0 38 73.7
CANSAT54G2283 Cannabis sativa HOM05D001365 ORTHO05D001291 6.8e-07 57.0 33 78.8
Ciclev10029160m.g Citrus clementina HOM05D001365 ORTHO05D001291 6.8e-07 57.0 34 82.4
FvH4_3g35460 Fragaria vesca HOM05D001365 ORTHO05D001291 6.8e-07 57.0 43 69.8
FAN11G0606 Fragaria x ananassa HOM05D001365 ORTHO05D001291 6.8e-07 57.0 43 69.8
FAN16G3619 Fragaria x ananassa HOM05D001365 ORTHO05D001291 6.8e-07 57.0 43 69.8
FAN21G3131 Fragaria x ananassa HOM05D001365 ORTHO05D001291 6.8e-07 57.0 43 69.8
FAN25G3302 Fragaria x ananassa HOM05D001365 ORTHO05D001291 6.8e-07 57.0 43 69.8
Gohir.A08G000177 Gossypium hirsutum HOM05D001365 ORTHO05D001291 6.8e-07 57.0 33 78.8
PSO339G4215 Papaver somniferum HOM05D001365 ORTHO05D001291 6.8e-07 57.0 50 60.0
PSO384G1796 Papaver somniferum HOM05D001365 ORTHO05D001291 6.8e-07 57.0 50 60.0
ClCG03G001960 Citrullus lanatus HOM05D001365 ORTHO05D001291 8.9e-07 56.6 33 75.8
Dinv32869 Davidia involucrata HOM05D001365 ORTHO05D001291 8.9e-07 56.6 36 77.8
Eucgr.B02389 Eucalyptus grandis HOM05D001365 ORTHO05D001291 8.9e-07 56.6 34 76.5
CDE04G2525 Ceratophyllum demersum HOM05D001365 ORTHO05D001291 1.2e-06 56.2 54 61.1
Atru.chr8.1942 Acer truncatum HOM05D001365 ORTHO05D001291 2.0e-06 55.5 35 71.4
Actinidia23956 Actinidia chinensis HOM05D001365 ORTHO05D001291 2.0e-06 55.5 36 75.0
MSTRG.17839 Avicennia marina HOM05D001365 ORTHO05D001291 2.0e-06 55.5 28 89.3
CDE07G1326 Ceratophyllum demersum HOM05D001365 ORTHO05D001291 2.0e-06 55.5 49 61.2
Cc01_g12490 Coffea canephora HOM05D001365 ORTHO05D001291 2.0e-06 55.5 28 89.3
Mapoly0015s0045 Marchantia polymorpha HOM05D001365 ORTHO05D001291 2.0e-06 55.5 30 86.7
Oeu054162.3 Olea europaea HOM05D001365 ORTHO05D001291 2.0e-06 55.5 30 83.3
vmacro14532 Vaccinium macrocarpon HOM05D001365 ORTHO05D001291 2.0e-06 55.5 35 77.1
Aa31LG1G22270 Aethionema arabicum HOM05D001365 ORTHO05D001291 2.6e-06 55.1 40 70.0
Lsat_1_v5_gn_8_77900 Lactuca sativa HOM05D001365 ORTHO05D001291 2.6e-06 55.1 28 89.3
Lj1A157T43 Lonicera japonica HOM05D001365 ORTHO05D001291 2.6e-06 55.1 28 89.3
Manes.11G133200 Manihot esculenta HOM05D001365 ORTHO05D001291 2.6e-06 55.1 29 86.2
TWI75G0996 Tripterygium wilfordii HOM05D001365 ORTHO05D001291 2.6e-06 55.1 37 70.3
MELO3C020710.2 Cucumis melo HOM05D001365 ORTHO05D001291 3.4e-06 54.7 33 72.7
CsaV3_1G033610 Cucumis sativus L. HOM05D001365 ORTHO05D001291 3.4e-06 54.7 33 72.7
Hma1.2p1_0624F.1_g191370 Hydrangea macrophylla HOM05D001365 ORTHO05D001291 3.4e-06 54.7 38 78.9
MBI05_g10363_MAGBIO Magnolia biondii HOM05D001365 ORTHO05D001291 3.4e-06 54.7 43 72.1
Peaxi162Scf00406g00131 Petunia axillaris HOM05D001365 ORTHO05D001291 3.4e-06 54.7 36 75.0
Rhsim05G0189500 Rhododendron simsii HOM05D001365 ORTHO05D001291 3.4e-06 54.7 43 60.5
TWI31G0647 Tripterygium wilfordii HOM05D001365 ORTHO05D001291 3.4e-06 54.7 34 73.5
HPP92_018998 Vanilla planifolia HOM05D001365 ORTHO05D001291 3.4e-06 54.7 29 89.7
ECA236G4565 Erigeron canadensis HOM05D001365 ORTHO05D001291 4.4e-06 54.3 36 72.2
Hma1.2p1_0035F.1_g022155 Hydrangea macrophylla HOM05D001365 ORTHO05D001291 4.4e-06 54.3 28 89.3
Potri.016G093944 Populus trichocarpa HOM05D001365 ORTHO05D001291 4.4e-06 54.3 43 65.1
TPR.G7294 Trifolium pratense HOM05D001365 ORTHO05D051471 4.4e-06 54.3 39 66.7
unitig_747.g21427 Utricularia gibba HOM05D001365 ORTHO05D001291 4.4e-06 54.3 28 85.7
vmacro20131 Vaccinium macrocarpon HOM05D001365 ORTHO05D001291 4.4e-06 54.3 36 69.4
Actinidia33857 Actinidia chinensis HOM05D001365 ORTHO05D001291 5.8e-06 53.9 36 75.0
Sc20g0004800 Simmondsia chinensis HOM05D001365 ORTHO05D001291 5.8e-06 53.9 33 78.8
Zm00001eb012600 Zea mays HOM05D001365 ORTHO05D001291 5.8e-06 53.9 48 56.2
ATR0559G283 Amborella trichopoda HOM05D001365 ORTHO05D001291 7.6e-06 53.5 55 50.9
BcaB08g36207 Brassica carinata HOM05D001365 ORTHO05D001291 7.6e-06 53.5 48 56.2
Cfa011463 Carpinus fangiana HOM05D001365 ORTHO05D001291 9.9e-06 53.1 27 88.9
CiPaw.13G097800 Carya illinoinensis HOM05D001365 ORTHO05D001291 9.9e-06 53.1 27 88.9
Haze_24048 Corylus avellana HOM05D001365 ORTHO05D001291 9.9e-06 53.1 27 88.9
QL01p032964 Quercus lobata HOM05D001365 ORTHO05D001291 9.9e-06 53.1 27 88.9
unitig_0.g2161 Utricularia gibba HOM05D001365 ORTHO05D001291 9.9e-06 53.1 28 78.6
HPP92_014314 Vanilla planifolia HOM05D001365 ORTHO05D001291 9.9e-06 53.1 40 70.0


User provided reference genes

Program Settings