Gene: Sopen11g030910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g030910
  • Transcript Identifier Sopen11g030910.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 66202732-66205962 : positive

Gene Family Information

  • ID HOM05D001365
  • #Genes/#Species 458/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g030910.1

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: nucleotide binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein .
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G02530
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G02530

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G59950
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G02530

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025715 Chromatin target of PRMT1 protein, C-terminal
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.10.1.2.1 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.mRNA export adaptor activities.mRNA-binding adaptor (ALY/Tho4)