Gene: Lsat_1_v5_gn_8_77900

General Information

Structural Information

Species Lactuca sativa
Gene Identifier Lsat_1_v5_gn_8_77900
Transcript Identifier Lsat_1_v5_gn_8_77900.1
Gene Type Coding gene
Location Lsat_1_v8_lg_8 : 111337306-111339684 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D001365
#Genes/#Species 458/98
Phylogenetic origin

ID ORTHO05D001291
#Genes/#Species 438/98
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

id Lsat_1_v5_gn_8_77900.v5
pacid 38953106

Descriptions

Short descriptions
Ortholog descriptions

Description K12881 - THO complex subunit 4 (THOC4, ALY)

Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT5G02530
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT5G02530

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005730	ISO	PLAZA Integrative Orthology	nucleolus	AT5G59950
GO:0005654	ISO	PLAZA Integrative Orthology	nucleoplasm	AT5G02530

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR000504	RNA recognition motif domain
IPR025715	Chromatin target of PRMT1 protein, C-terminal
IPR035979	RNA-binding domain superfamily

Mapman id	Description
16.10.1.2.1	RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.mRNA export adaptor activities.mRNA-binding adaptor (ALY/Tho4)