Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 3.5e-208 728.0 357 100.0
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.3e-183 646.4 353 89.5
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 3.6e-181 638.3 353 87.8
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.8e-180 636.0 354 89.5
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.0e-159 567.0 355 77.5
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 2.3e-159 565.8 344 79.4
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 5.1e-159 564.7 343 78.1
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 8.7e-159 563.9 342 79.2
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 2.1e-157 559.3 347 76.9
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 3.1e-156 555.4 341 76.8
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 5.3e-156 554.7 344 76.7
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.2e-152 543.5 338 76.3
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.2e-152 543.5 340 75.9
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.6e-152 543.1 342 75.1
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.3e-151 540.0 341 74.2
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.3e-151 540.0 346 75.1
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.0e-151 538.9 333 76.0
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.0e-151 538.9 347 74.1
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 5.1e-151 538.1 336 76.5
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.5e-150 536.6 333 76.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.3e-150 535.0 329 76.6
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 5.6e-150 534.6 311 79.1
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 5.6e-150 534.6 336 75.0
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.4e-150 534.3 336 74.7
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 7.4e-150 534.3 347 73.8
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.6e-150 533.9 341 73.9
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.1e-149 532.7 346 72.8
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.8e-149 531.6 316 78.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 4.8e-149 531.6 340 74.4
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 6.2e-149 531.2 334 74.9
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.2e-149 531.2 333 76.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 6.2e-149 531.2 310 78.7
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.1e-148 530.4 344 73.3
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.4e-148 530.0 346 72.8
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.8e-148 529.6 339 74.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.4e-148 529.3 337 73.9
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.0e-148 528.5 333 75.4
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 5.3e-148 528.1 318 75.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 9.0e-148 527.3 345 72.5
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 2.0e-147 526.2 336 73.2
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 2.9e-146 522.3 334 74.3
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.4e-146 521.2 351 71.2
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 8.4e-146 520.8 339 71.7
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.1e-145 520.4 318 77.4
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.2e-145 518.8 337 73.0
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 4.2e-145 518.5 323 75.2
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 2.7e-144 515.8 335 71.3
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 6.0e-144 514.6 324 75.0
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.0e-143 513.8 324 73.8
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.0e-143 513.8 343 71.1
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.0e-143 513.8 336 71.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.8e-143 513.1 345 71.0
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 3.0e-143 512.3 343 70.8
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 3.9e-143 511.9 343 70.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 3.9e-143 511.9 343 70.8
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 3.9e-143 511.9 307 76.2
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 8.7e-143 510.8 343 70.6
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.1e-142 510.4 324 73.1
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.9e-142 509.6 308 75.6
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.6e-142 508.1 345 71.0
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 7.4e-142 507.7 344 71.2
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 7.4e-142 507.7 343 70.3
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 7.4e-142 507.7 343 70.3
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 7.4e-142 507.7 333 72.7
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.3e-141 506.9 340 69.4
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.3e-141 506.9 342 70.8
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.3e-141 506.9 332 71.1
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.6e-141 506.5 336 72.3
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.1e-141 506.1 342 71.3
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.8e-141 505.8 347 71.5
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 6.2e-141 504.6 348 70.4
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 6.2e-141 504.6 340 69.4
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.1e-140 503.8 356 69.1
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.1e-140 503.8 308 75.0
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.1e-140 503.8 340 70.0
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.8e-140 503.1 343 70.0
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.4e-140 502.7 349 71.1
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 3.1e-140 502.3 354 69.5
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 3.1e-140 502.3 326 73.3
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 4.0e-140 501.9 332 70.8
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.0e-140 501.9 325 71.4
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 5.3e-140 501.5 325 71.4
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.0e-138 497.3 336 69.6
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 3.8e-138 495.4 351 68.4
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.9e-137 493.0 347 68.6
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 2.1e-136 489.6 355 69.3
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.1e-134 483.8 340 68.2
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.5e-134 483.4 309 72.8
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.5e-134 482.6 336 68.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.5e-134 482.6 382 62.8
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 7.4e-134 481.1 331 67.4
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.3e-133 480.3 336 68.5
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.8e-132 476.5 304 74.3
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 2.4e-132 476.1 324 71.9
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 6.9e-132 474.6 307 71.3
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.4e-131 472.2 326 69.0
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 5.9e-131 471.5 331 68.3
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 5.0e-130 468.4 324 67.3
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.5e-129 464.9 324 70.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 9.3e-129 464.2 286 74.5
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.2e-128 463.8 315 70.8
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 8.7e-127 457.6 332 67.8
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.1e-126 457.2 317 69.7
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 4.3e-126 455.3 365 63.6
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.3e-126 455.3 319 67.7
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 2.4e-124 449.5 323 68.4
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.9e-124 448.0 338 62.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 9.1e-124 447.6 359 62.1
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 9.1e-124 447.6 263 78.3
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.0e-123 446.4 303 69.0
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 4.5e-123 445.3 264 77.7
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.5e-123 445.3 306 66.0
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 4.5e-123 445.3 338 62.1
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.7e-123 444.5 283 71.4
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 8.8e-119 431.0 340 62.6
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.6e-118 429.5 347 60.2
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 7.4e-118 427.9 309 65.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 6.3e-117 424.9 276 71.0
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 4.1e-116 422.2 306 63.1
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 4.5e-115 418.7 248 78.6
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.8e-111 406.8 267 70.4
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.5e-110 403.7 313 61.3
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 4.4e-110 402.1 324 59.3
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 7.7e-107 391.3 315 58.7
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 4.0e-103 379.0 401 50.4
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.0e-95 354.4 221 73.3
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 2.3e-95 353.2 326 58.0
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.5e-89 334.0 230 66.5
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 4.7e-88 328.9 238 64.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.8e-84 317.0 259 59.5
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.8e-84 317.0 306 52.0
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.8e-80 303.1 227 63.0
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 6.4e-77 292.0 268 55.2
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.6e-72 277.3 291 50.5
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.1e-68 264.6 169 72.2
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 8.9e-63 245.0 150 75.3
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 1.7e-58 230.7 143 70.6
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-56 223.8 195 59.0
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 3.5e-51 206.5 183 58.5
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.9e-45 186.8 127 73.2
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 9.9e-38 161.8 101 77.2
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 4.5e-30 136.3 171 48.0
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 9.6e-25 118.6 77 62.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.3e-21 108.2 64 76.6
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-21 107.5 74 68.9
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 8.4e-21 105.5 66 71.2
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.3e-16 91.7 55 76.4
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 1.7e-13 81.3 138 37.0
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 3.8e-13 80.1 76 50.0
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 9.3e-12 75.5 200 26.0
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 9.3e-12 75.5 77 53.2
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.6e-11 73.2 43 72.1
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 2.3e-10 70.9 81 53.1
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 5.7e-09 66.2 183 27.3
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 1.3e-08 65.1 181 30.9
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.3e-08 65.1 95 34.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 3.7e-08 63.5 186 28.5
AagrBONN_evm.TU.Sc2ySwM_117.2157 Anthoceros agrestis HOM05D002024 ORTHO05D007288 4.8e-08 63.2 152 32.9
Duzib248G0941 Durio zibethinus HOM05D002024 ORTHO05D007288 1.4e-07 61.6 213 27.7
MCO07G578 Micromonas commoda HOM05D002024 ORTHO05D004352 1.4e-07 61.6 154 29.9
Psat7g157200 Pisum sativum HOM05D002024 ORTHO05D007288 2.4e-07 60.8 167 30.5
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 4.1e-07 60.1 157 31.2
A04p24930 Brassica napus HOM05D002024 ORTHO05D007288 5.3e-07 59.7 157 31.2
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 9.1e-07 58.9 153 28.1
Gohir.A11G231400 Gossypium hirsutum HOM05D002024 ORTHO05D004352 1.2e-06 58.5 211 28.4
THA.LOC104826151 Tarenaya hassleriana HOM05D002024 ORTHO05D007288 2.0e-06 57.8 156 30.1
VMungo1127G2134 Vigna mungo HOM05D002024 ORTHO05D007288 2.0e-06 57.8 154 30.5
Phvul.011G103500 Phaseolus vulgaris HOM05D002024 ORTHO05D007288 2.6e-06 57.4 154 30.5
Eucgr.A01124 Eucalyptus grandis HOM05D002024 ORTHO05D007288 3.4e-06 57.0 170 27.6
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 4.5e-06 56.6 212 28.3
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.5e-06 56.6 153 28.8
Medtr4g048230 Medicago truncatula HOM05D002024 ORTHO05D007288 4.5e-06 56.6 167 29.3
Thecc.02G316100 Theobroma cacao HOM05D002024 ORTHO05D007288 4.5e-06 56.6 155 29.7
GSVIVG01030425001 Vitis vinifera HOM05D002024 ORTHO05D007288 4.5e-06 56.6 154 30.5
Aqoxy1G02138 Aquilegia oxysepala HOM05D002024 ORTHO05D007288 5.9e-06 56.2 202 28.2
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 5.9e-06 56.2 211 28.4
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 5.9e-06 56.2 153 28.8
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 5.9e-06 56.2 153 28.8
Nitab4.5_0004417g0080 Nicotiana tabacum HOM05D002024 ORTHO05D007288 5.9e-06 56.2 155 30.3
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 5.9e-06 56.2 207 27.5
ATR0794G134 Amborella trichopoda HOM05D002024 ORTHO05D007288 7.7e-06 55.8 173 28.9
Gorai.007G256900 Gossypium raimondii HOM05D002024 ORTHO05D004352 7.7e-06 55.8 211 27.5
SEGI_14026 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 7.7e-06 55.8 152 30.3


User provided reference genes

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