Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 2631.7 1313 100.0
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 2369.3 1315 91.0
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 2354.7 1318 90.9
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 2278.4 1321 88.0
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 2161.0 1321 82.9
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 2105.1 1326 81.3
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 2088.2 1326 80.4
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 2062.7 1339 78.7
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 2055.8 1338 78.7
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 2053.1 1326 79.3
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 2012.3 1326 77.8
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 2004.9 1333 78.1
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1729.9 1336 66.1
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1709.5 1332 65.6
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1693.3 1336 64.8
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1661.4 1334 64.4
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1657.1 1332 65.4
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1650.2 1332 65.3
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1645.6 1334 64.8
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1641.7 1334 64.6
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1640.9 1339 63.0
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1639.0 1343 64.1
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1635.2 1334 64.3
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1633.6 1336 63.5
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1626.3 1336 62.5
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1624.8 1336 64.0
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1623.2 1331 64.2
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1622.1 1349 63.5
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1617.4 1332 63.5
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1606.3 1332 63.1
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1588.5 1337 61.3
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1577.0 1401 59.0
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1576.2 1278 63.2
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1571.6 1333 61.0
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1569.7 1299 62.8
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1563.9 1341 60.3
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1556.2 1212 65.6
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1555.0 1372 60.0
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1550.8 1212 65.5
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1548.1 1330 62.3
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1545.8 1338 60.1
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1545.4 1333 61.1
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1545.0 1333 59.9
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1542.3 1333 59.6
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1540.4 1332 59.7
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1536.9 1341 59.8
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1534.2 1342 58.7
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1526.5 1239 62.2
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1525.8 1337 60.4
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1523.8 1337 58.9
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1520.8 1338 60.0
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1520.0 1333 59.3
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1518.4 1482 55.3
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1511.9 1337 60.1
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1503.0 1337 59.6
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1489.6 1329 58.2
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1475.7 1341 57.6
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1470.3 1340 57.8
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1467.2 1328 58.1
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1463.4 1342 57.1
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1463.0 1331 57.9
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1463.0 1344 58.0
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1463.0 1342 58.2
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1462.2 1332 57.1
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1455.7 1336 57.6
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1455.7 1331 58.0
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1454.1 1339 56.8
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1449.5 1337 58.1
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1446.4 1335 56.3
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1439.5 1330 56.6
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1425.2 1337 56.2
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1421.0 1328 56.7
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1406.7 1339 56.7
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1400.6 1336 56.6
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1395.2 1338 56.0
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1389.8 1321 56.5
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1389.4 1321 56.5
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1384.0 1329 56.5
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1382.9 1324 56.3
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1381.7 1331 55.9
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1375.1 1324 56.0
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1375.1 1324 56.0
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1364.4 1334 54.9
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1341.6 1320 54.8
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1339.3 1280 54.8
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1328.2 1333 53.3
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1322.8 1257 55.1
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1242.3 1097 59.3
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1236.5 1320 51.4
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1196.0 1316 49.8
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1181.0 1326 49.8
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1176.4 1321 49.1
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1172.5 987 61.5
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1154.8 982 61.5
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1145.2 1339 47.9
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1141.7 907 63.3
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 2.7e-311 1072.4 860 63.3
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 6.0e-306 1054.7 1231 49.2
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 3.1e-278 962.6 1326 42.3
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 6.4e-276 954.9 1299 45.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 8.5e-244 848.2 1258 40.4
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 3.4e-237 826.2 1115 42.4
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 1.3e-231 807.7 1282 39.5
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 1.4e-227 794.3 1269 37.0
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.8e-215 753.4 936 45.1
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.7e-167 594.7 483 64.2
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 9.0e-153 545.8 584 54.1
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 3.8e-151 540.4 598 49.7
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 6.9e-121 439.9 1140 29.1
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 5.2e-108 397.1 291 66.0
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 5.9e-96 357.1 326 57.1
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.6e-91 341.7 319 54.5
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.2e-88 332.8 1059 28.5
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 7.2e-86 323.6 371 49.3
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 1.4e-81 309.3 292 59.9
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 5.4e-57 227.6 316 43.7
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.3e-55 223.0 199 57.8
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.7e-50 206.1 168 58.9
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.3e-47 196.4 307 41.7
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.1e-46 193.4 229 47.6
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.7e-39 169.5 148 56.1
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 8.7e-39 167.2 119 68.9
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 1.4e-28 133.3 127 56.7
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 2.2e-26 125.9 121 51.2
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 3.8e-26 125.2 659 25.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.1e-16 92.8 75 64.0
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 5.3e-12 78.2 93 37.6
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 3.2e-09 68.9 106 36.8
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.8e-07 63.2 67 53.7
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 4.3e-06 58.5 136 31.6
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 5.7e-06 58.2 47 57.4


User provided reference genes

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