Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 2.3e-202 708.8 370 100.0
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.9e-189 665.2 370 94.1
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 8.3e-189 663.7 370 93.5
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.1e-185 653.3 370 91.4
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 6.2e-168 594.3 340 88.2
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.5e-166 589.7 340 87.9
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 3.5e-163 578.6 343 86.6
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 1.3e-162 576.6 377 81.4
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.3e-162 576.6 378 81.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 2.5e-161 572.4 352 84.4
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 4.3e-161 571.6 371 82.2
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.6e-161 571.2 363 81.0
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 2.4e-159 565.8 350 84.0
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 2.4e-159 565.8 339 85.3
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 1.3e-157 560.1 327 86.5
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.2e-157 559.3 363 79.3
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.1e-156 557.0 339 84.7
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 1.1e-156 557.0 375 79.5
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.1e-156 557.0 324 85.2
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 3.2e-156 555.4 350 81.7
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 5.4e-156 554.7 345 82.0
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.6e-155 553.1 324 85.8
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 1.6e-155 553.1 343 83.4
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 1.6e-155 553.1 357 81.0
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 4.6e-155 551.6 324 85.5
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.3e-154 550.1 346 81.8
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 1.3e-154 550.1 355 80.0
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.0e-154 548.9 363 79.1
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.1e-153 547.0 385 75.8
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.5e-153 546.6 341 82.4
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.9e-153 546.2 324 85.2
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 1.9e-153 546.2 376 77.9
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 2.5e-153 545.8 355 80.3
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 3.3e-153 545.4 326 85.0
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.3e-153 545.0 348 80.2
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.3e-153 545.0 323 83.6
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 5.6e-153 544.7 326 84.7
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 7.4e-153 544.3 324 84.9
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 9.6e-153 543.9 326 84.0
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.3e-152 543.5 348 79.9
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.6e-152 543.1 354 79.7
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.1e-152 542.7 354 78.5
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.1e-152 542.7 343 80.5
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.7e-152 542.0 348 79.6
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 6.2e-152 541.2 369 77.0
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.1e-151 540.4 363 78.0
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 4.0e-151 538.5 326 84.0
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 5.3e-151 538.1 363 77.4
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 6.9e-151 537.7 362 78.2
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 6.9e-151 537.7 331 83.7
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 9.0e-151 537.3 326 83.7
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 1.2e-150 537.0 345 80.9
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 1.2e-150 537.0 326 83.7
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.5e-150 536.6 330 81.5
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.0e-150 536.2 364 78.0
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 2.6e-150 535.8 328 83.8
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 3.4e-150 535.4 343 79.3
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 3.4e-150 535.4 441 66.9
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 4.5e-150 535.0 366 76.2
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.8e-150 534.6 362 78.5
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.8e-150 534.6 358 77.7
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 5.8e-150 534.6 358 77.7
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.0e-149 533.9 326 82.5
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.0e-149 533.9 354 79.1
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.7e-149 533.1 371 76.0
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.9e-149 532.3 362 77.6
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 3.8e-149 531.9 367 76.8
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 8.4e-149 530.8 348 78.7
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.4e-148 530.0 367 75.2
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.4e-148 530.0 367 75.2
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 1.4e-148 530.0 348 77.9
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 2.5e-148 529.3 371 75.7
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 4.2e-148 528.5 368 76.4
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 7.1e-148 527.7 371 75.2
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 9.3e-148 527.3 334 81.7
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.3e-148 527.3 343 79.3
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 9.3e-148 527.3 427 67.7
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.2e-147 526.9 356 76.7
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.2e-147 526.9 369 75.6
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.2e-147 526.9 366 76.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.1e-147 526.2 364 76.4
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.1e-147 526.2 364 75.3
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 3.5e-147 525.4 354 76.6
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 3.5e-147 525.4 368 76.1
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 3.5e-147 525.4 368 76.1
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 4.6e-147 525.0 350 78.9
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 4.6e-147 525.0 358 76.8
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 6.0e-147 524.6 347 79.3
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.0e-147 524.6 324 81.8
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 6.0e-147 524.6 353 77.3
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 6.0e-147 524.6 392 71.7
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 7.9e-147 524.2 382 74.6
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 1.0e-146 523.9 323 80.8
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 1.3e-146 523.5 364 75.8
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 1.8e-146 523.1 364 75.8
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 1.8e-146 523.1 348 77.6
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 1.8e-146 523.1 364 76.6
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 2.3e-146 522.7 343 78.4
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 3.9e-146 521.9 325 80.3
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.9e-146 521.9 362 75.7
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 5.1e-146 521.5 365 75.6
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 6.7e-146 521.2 323 81.4
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 6.7e-146 521.2 380 73.7
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 8.7e-146 520.8 346 78.3
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 8.7e-146 520.8 350 76.9
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-145 520.4 362 75.4
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.1e-145 520.4 362 75.4
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.1e-145 520.4 350 77.1
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 2.5e-145 519.2 367 74.7
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.5e-145 519.2 323 80.5
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 3.3e-145 518.8 363 75.5
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 3.3e-145 518.8 363 75.5
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 3.3e-145 518.8 321 81.9
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.3e-145 518.8 377 75.9
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 5.7e-145 518.1 363 76.3
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.8e-144 515.0 300 85.0
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-143 513.1 367 73.8
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.8e-143 513.1 367 73.8
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 9.0e-143 510.8 370 74.1
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 3.4e-142 508.8 369 73.7
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 5.8e-142 508.1 323 79.6
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.0e-141 507.3 343 74.6
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 1.0e-141 507.3 453 63.8
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 1.7e-141 506.5 364 73.6
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.8e-141 505.4 348 73.9
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 8.4e-141 504.2 356 75.3
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.2e-140 502.3 381 71.1
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 7.9e-139 497.7 371 72.0
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.8e-138 496.5 287 86.4
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.0e-138 495.7 375 72.5
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 5.7e-137 491.5 287 85.7
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 2.2e-136 489.6 328 75.0
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 6.3e-136 488.0 326 75.5
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 8.2e-136 487.6 324 76.5
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 2.0e-134 483.0 370 70.5
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.6e-134 482.6 368 71.7
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.2e-133 479.6 340 73.5
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.9e-132 476.5 371 70.4
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.9e-132 476.5 326 77.6
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.9e-131 471.1 312 76.9
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 7.9e-131 471.1 312 76.6
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.0e-130 470.7 326 73.3
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 5.1e-130 468.4 301 77.1
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.2e-128 463.0 329 71.7
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.4e-127 460.3 299 76.9
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 1.3e-125 453.8 348 67.8
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.4e-124 450.3 330 73.3
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.9e-114 415.6 317 67.8
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 5.5e-108 395.2 344 61.0
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 4.0e-106 389.0 313 71.2
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.5e-105 387.1 250 79.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.7e-102 376.3 257 79.4
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 3.8e-101 372.5 268 76.9
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.7e-96 357.1 289 64.0
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.8e-90 337.0 230 76.1
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 7.1e-71 271.9 187 77.5
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 1.3e-69 267.7 308 51.3
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.1e-66 258.1 195 71.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 7.1e-63 245.4 368 44.6
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 4.4e-49 199.5 112 83.9
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 7.6e-49 198.7 113 90.3
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 2.6e-41 173.7 172 61.6
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 2.6e-41 173.7 172 61.6
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 7.6e-41 172.2 188 58.0
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.6e-33 147.1 104 68.3
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.7e-32 144.4 102 69.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.7e-32 144.4 102 69.6
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.2e-32 144.1 284 34.2
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.1e-31 141.7 102 68.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 1.4e-31 141.4 101 67.3
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 7.1e-31 139.0 106 65.1
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.3e-29 134.0 107 60.7
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 3.3e-28 130.2 106 60.4
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 4.8e-19 99.8 64 73.4
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 1.1e-18 98.6 67 80.6
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.9e-15 87.8 49 89.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 4.2e-15 86.7 61 77.0
C05p24790 Brassica napus HOM05D003055 ORTHO05D013026 6.5e-08 62.8 38 71.1
BcaC01g02956 Brassica carinata HOM05D003055 ORTHO05D013026 7.2e-07 59.3 38 68.4


User provided reference genes

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