Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1471.1 741 100.0
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1440.2 741 97.7
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1418.7 741 96.2
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1408.3 741 94.6
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1365.5 741 91.6
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1362.1 743 91.7
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1356.7 740 91.5
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1355.5 740 91.6
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1353.2 741 90.1
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1351.3 768 88.7
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1350.9 741 90.3
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1346.3 741 89.3
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1345.5 739 90.0
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1345.1 741 89.3
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1343.9 741 89.5
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1343.2 741 90.6
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1341.6 742 89.9
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1340.5 741 89.2
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 741 89.5
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1337.4 741 89.1
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1337.0 741 89.1
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1336.6 741 89.3
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1336.2 741 89.3
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1332.0 741 88.7
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1332.0 741 88.7
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1331.6 741 89.1
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1331.2 743 89.5
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1331.2 741 88.4
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1326.2 747 88.1
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1325.5 741 89.1
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1324.3 741 88.1
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 741 88.1
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 740 88.9
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 741 88.3
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 741 88.3
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1322.8 741 88.1
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 741 88.4
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 741 88.3
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 741 88.0
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 742 88.0
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1317.8 740 88.2
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1315.8 740 88.1
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1315.8 741 88.3
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 740 87.3
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1312.7 738 88.1
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1310.4 743 87.5
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 740 87.8
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 743 88.4
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 763 86.6
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 763 86.6
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 740 86.9
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1307.7 741 86.9
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1307.4 741 87.0
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1307.0 741 87.2
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 741 87.2
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1305.4 741 86.9
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 741 86.9
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1305.0 740 87.6
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1304.3 740 86.9
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1303.9 741 87.3
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 741 86.6
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 742 86.7
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 741 87.0
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 740 86.1
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 741 87.9
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 741 86.8
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 740 85.9
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 739 86.9
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 742 86.7
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 740 85.9
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 741 87.7
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 740 85.8
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 743 87.5
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 740 85.9
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1299.3 741 86.2
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 742 86.4
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 740 85.8
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 742 87.2
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 741 87.2
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 740 86.1
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 741 86.1
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1295.4 741 87.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 745 86.2
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 741 87.3
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 741 85.8
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1291.9 744 87.0
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1290.8 744 86.8
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1290.8 741 86.1
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 740 85.7
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1287.3 742 85.6
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 741 86.4
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1285.0 743 86.3
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1285.0 707 90.0
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 743 85.6
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1282.7 744 86.4
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 803 80.6
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1277.7 741 85.6
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1277.7 741 85.0
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1276.9 744 86.0
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1276.5 737 85.2
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1274.6 757 84.0
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1273.1 743 85.6
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 744 84.7
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 822 79.1
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1267.3 747 84.5
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1260.7 711 87.9
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1259.2 773 81.6
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1241.5 736 84.4
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1237.6 710 86.6
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1237.2 740 84.1
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1233.8 674 91.4
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1233.8 745 81.9
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1233.0 707 86.4
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 735 85.0
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1222.2 739 82.3
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1216.4 747 81.1
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1209.9 668 89.7
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1204.5 747 80.5
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1183.7 750 80.9
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1147.9 616 91.4
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1137.1 738 76.8
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1135.6 688 81.1
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1130.9 741 75.4
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1121.3 631 87.2
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1103.2 740 73.5
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1078.5 743 72.1
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 8.3e-297 1023.5 636 80.0
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 5.6e-245 851.3 667 64.3
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 2.1e-231 806.2 699 60.5
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 6.5e-225 784.6 539 76.6
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.1e-216 757.3 644 62.0
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.3e-213 745.7 523 74.6
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 5.0e-209 731.9 453 82.1
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 7.5e-205 718.0 464 78.9
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.7e-204 715.7 741 55.2
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.0e-203 711.4 739 54.9
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 2.0e-133 480.7 263 88.2
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 9.9e-133 478.4 433 61.2
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 4.4e-96 356.7 218 82.6
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.0e-81 308.9 579 36.8
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 3.2e-75 287.3 152 90.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 2.2e-71 274.6 143 92.3
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.6e-59 233.4 170 72.4
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 9.9e-40 169.5 273 38.5
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.9e-38 165.2 84 91.7
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.7e-37 161.4 98 78.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 4.3e-35 154.1 80 91.2
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 8.7e-28 129.8 80 77.5
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 1.9e-27 128.6 72 83.3
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 3.6e-26 124.4 71 85.9
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 7.6e-24 116.7 69 76.8
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 2.7e-21 108.2 70 74.3
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 1.9e-19 102.1 85 58.8
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.3e-19 101.3 108 53.7
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 3.3e-19 101.3 222 35.1
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 7.4e-19 100.1 73 74.0
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.1e-18 98.6 75 68.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.8e-17 95.5 75 65.3
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 3.1e-17 94.7 85 55.3
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 6.4e-15 87.0 69 59.4
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 7.1e-14 83.6 47 85.1
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 9.3e-14 83.2 49 89.8
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 3.9e-12 77.8 61 62.3
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.7e-12 77.0 47 78.7
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.5e-11 75.1 46 78.3
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.3e-11 74.7 45 80.0
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.3e-10 72.8 41 87.8
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.8e-10 71.6 43 72.1
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.4e-09 69.3 145 31.7
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 3.2e-06 58.2 33 81.8
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 7.1e-06 57.0 58 55.2


User provided reference genes

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