Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10880 Trifolium pratense HOM05D003434 ORTHO05D004465 7.4e-25 116.3 55 100.0
TPR.G27919 Trifolium pratense HOM05D003434 ORTHO05D004465 5.8e-22 106.7 58 91.4
TPR.G685 Trifolium pratense HOM05D003434 ORTHO05D004465 5.8e-22 106.7 58 91.4
Ca_13044_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 1.3e-21 105.5 58 89.7
Psat3g183280 Pisum sativum HOM05D003434 ORTHO05D004465 1.3e-21 105.5 58 89.7
Psat6g028560 Pisum sativum HOM05D003434 ORTHO05D004465 1.3e-21 105.5 58 89.7
Psat6g129960 Pisum sativum HOM05D003434 ORTHO05D004465 1.3e-21 105.5 58 89.7
Lalb_Chr04g0258261 Lupinus albus HOM05D003434 ORTHO05D004465 2.2e-21 104.8 58 87.9
Medtr7g069430 Medicago truncatula HOM05D003434 ORTHO05D004465 2.9e-21 104.4 58 89.7
arahy.Tifrunner.gnm1.ann1.L3HXPU Arachis hypogaea HOM05D003434 ORTHO05D004465 4.9e-21 103.6 58 86.2
arahy.Tifrunner.gnm1.ann1.LC97RS Arachis hypogaea HOM05D003434 ORTHO05D004465 4.9e-21 103.6 58 86.2
Phvul.001G137900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.9e-21 103.6 58 87.9
Phvul.008G022900 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.9e-21 103.6 58 87.9
Phvul.008G022950 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.9e-21 103.6 58 87.9
Phvul.011G077301 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 4.9e-21 103.6 58 87.9
Glyma.08G255000 Glycine max HOM05D003434 ORTHO05D004465 6.5e-21 103.2 58 86.2
Glyma.18G278000 Glycine max HOM05D003434 ORTHO05D004465 6.5e-21 103.2 58 86.2
Medtr1g012990 Medicago truncatula HOM05D003434 ORTHO05D004465 6.5e-21 103.2 58 87.9
Phvul.001G137800 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 6.5e-21 103.2 58 87.9
Phvul.001G138125 Phaseolus vulgaris HOM05D003434 ORTHO05D004465 6.5e-21 103.2 58 87.9
Gohir.A11G282773 Gossypium hirsutum HOM05D003434 ORTHO05D004465 8.4e-21 102.8 58 84.5
Gohir.D11G296500 Gossypium hirsutum HOM05D003434 ORTHO05D004465 8.4e-21 102.8 58 84.5
Gorai.007G319600 Gossypium raimondii HOM05D003434 ORTHO05D004465 8.4e-21 102.8 58 84.5
VMungo1383G3569 Vigna mungo HOM05D003434 ORTHO05D004465 8.4e-21 102.8 58 86.2
Lalb_Chr17g0340551 Lupinus albus HOM05D003434 ORTHO05D004465 1.1e-20 102.4 58 84.5
Ca_05552_v3 Cicer arietinum L. HOM05D003434 ORTHO05D004465 1.4e-20 102.1 58 86.2
Lj1g0009928 Lotus japonicus HOM05D003434 ORTHO05D004465 1.4e-20 102.1 58 86.2
QL08p019759 Quercus lobata HOM05D003434 ORTHO05D004465 2.5e-20 101.3 58 82.8
Cfa020548 Carpinus fangiana HOM05D003434 ORTHO05D004465 3.2e-20 100.9 58 82.8
COL.COLO4_09433 Corchorus olitorius HOM05D003434 ORTHO05D004465 3.2e-20 100.9 58 82.8
Haze_07077 Corylus avellana HOM05D003434 ORTHO05D004465 3.2e-20 100.9 58 82.8
Haze_09473 Corylus avellana HOM05D003434 ORTHO05D004465 3.2e-20 100.9 58 82.8
Haze_09477 Corylus avellana HOM05D003434 ORTHO05D004465 3.2e-20 100.9 58 82.8
Duzib213G0358 Durio zibethinus HOM05D003434 ORTHO05D004465 4.2e-20 100.5 58 82.8
Glyma.02G114000 Glycine max HOM05D003434 ORTHO05D004465 5.5e-20 100.1 58 84.5
MD03G1224000 Malus domestica HOM05D003434 ORTHO05D004465 5.5e-20 100.1 58 82.8
MD11G1241800 Malus domestica HOM05D003434 ORTHO05D004465 5.5e-20 100.1 58 82.8
Nitab4.5_0000677g0140 Nicotiana tabacum HOM05D003434 ORTHO05D004465 5.5e-20 100.1 58 82.8
Prupe.4G185500 Prunus persica HOM05D003434 ORTHO05D004465 5.5e-20 100.1 58 82.8
CiPaw.11G173200 Carya illinoinensis HOM05D003434 ORTHO05D004465 7.1e-20 99.8 58 81.0
Cc05_g12350 Coffea canephora HOM05D003434 ORTHO05D004465 9.3e-20 99.4 58 81.0
Duzib170G0474 Durio zibethinus HOM05D003434 ORTHO05D004465 9.3e-20 99.4 58 82.8
CiPaw.12G120800 Carya illinoinensis HOM05D003434 ORTHO05D004465 1.2e-19 99.0 58 79.3
MELO3C015338.2 Cucumis melo HOM05D003434 ORTHO05D004465 1.2e-19 99.0 58 81.0
ECA236G4345 Erigeron canadensis HOM05D003434 ORTHO05D004465 1.2e-19 99.0 58 82.8
HanXRQChr10g0306991 Helianthus annuus HOM05D003434 ORTHO05D004465 1.2e-19 99.0 58 82.8
HanXRQChr12g0374331 Helianthus annuus HOM05D003434 ORTHO05D004465 1.2e-19 99.0 58 82.8
Lsat_1_v5_gn_7_105060 Lactuca sativa HOM05D003434 ORTHO05D004465 1.2e-19 99.0 58 82.8
Nitab4.5_0000826g0070 Nicotiana tabacum HOM05D003434 ORTHO05D004465 1.2e-19 99.0 58 81.0
Nitab4.5_0001618g0180 Nicotiana tabacum HOM05D003434 ORTHO05D004465 1.2e-19 99.0 58 81.0
CSS0016315 Camellia sinensis var. sinensis HOM05D003434 ORTHO05D004465 1.6e-19 98.6 58 81.0
Eucgr.F01099 Eucalyptus grandis HOM05D003434 ORTHO05D004465 1.6e-19 98.6 58 81.0
Potri.001G403100 Populus trichocarpa HOM05D003434 ORTHO05D004465 1.6e-19 98.6 58 81.0
Potri.011G122200 Populus trichocarpa HOM05D003434 ORTHO05D004465 1.6e-19 98.6 58 81.0
Sabra11G0108200 Salix brachista HOM05D003434 ORTHO05D002822 1.6e-19 98.6 58 81.0
CANSAT78G2387 Cannabis sativa HOM05D003434 ORTHO05D004465 2.1e-19 98.2 58 81.0
Hma1.2p1_0400F.1_g144660 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.1e-19 98.2 58 81.0
Hma1.2p1_3282F.1_g334840 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 2.1e-19 98.2 58 81.0
Lj1A848T59 Lonicera japonica HOM05D003434 ORTHO05D004465 2.1e-19 98.2 58 81.0
Lj8A158G80 Lonicera japonica HOM05D003434 ORTHO05D004465 2.1e-19 98.2 58 81.0
CsaV3_1G039130 Cucumis sativus L. HOM05D003434 ORTHO05D004465 2.7e-19 97.8 58 79.3
Nn1g07032 Nelumbo nucifera HOM05D003434 ORTHO05D004465 2.7e-19 97.8 58 79.3
GSVIVG01028448001 Vitis vinifera HOM05D003434 ORTHO05D004465 2.7e-19 97.8 58 81.0
Lsat_1_v5_gn_9_57521 Lactuca sativa HOM05D003434 ORTHO05D004465 3.5e-19 97.4 58 81.0
Peaxi162Scf00069g00118 Petunia axillaris HOM05D003434 ORTHO05D004465 3.5e-19 97.4 58 79.3
Solyc04g016380.3 Solanum lycopersicum HOM05D003434 ORTHO05D004465 3.5e-19 97.4 58 81.0
PGSC0003DMG400012714 Solanum tuberosum HOM05D003434 ORTHO05D004465 3.5e-19 97.4 58 81.0
ClCG01G010880 Citrullus lanatus HOM05D003434 ORTHO05D004465 4.6e-19 97.1 58 79.3
ClCG03G016840 Citrullus lanatus HOM05D003434 ORTHO05D004465 4.6e-19 97.1 58 79.3
PGR083G2248 Punica granatum HOM05D003434 ORTHO05D004465 4.6e-19 97.1 58 79.3
Sed0012815 Sechium edule HOM05D003434 ORTHO05D004465 4.6e-19 97.1 58 79.3
Hund24214 Selenicereus undatus HOM05D003434 ORTHO05D004465 4.6e-19 97.1 58 79.3
Sc21g0001090 Simmondsia chinensis HOM05D003434 ORTHO05D004465 4.6e-19 97.1 58 79.3
Ah.01g001850 Amaranthus hybridus HOM05D003434 ORTHO05D004465 6.0e-19 96.7 58 79.3
Manes.12G076100 Manihot esculenta HOM05D003434 ORTHO05D004465 6.0e-19 96.7 58 81.0
Thecc.07G077100 Theobroma cacao HOM05D003434 ORTHO05D004465 6.0e-19 96.7 58 81.0
AT1G52930 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 7.9e-19 96.3 58 82.8
Ciclev10008977m.g Citrus clementina HOM05D003434 ORTHO05D004465 7.9e-19 96.3 58 81.0
Actinidia09989 Actinidia chinensis HOM05D003434 ORTHO05D004465 1.0e-18 95.9 58 81.0
AL3G28010 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 1.0e-18 95.9 58 82.8
Carub.0001s4208 Capsella rubella HOM05D003434 ORTHO05D004465 1.0e-18 95.9 58 82.8
PSO832G4191 Papaver somniferum HOM05D003434 ORTHO05D004465 1.0e-18 95.9 58 79.3
CAN.G1237.13 Capsicum annuum HOM05D003434 ORTHO05D004465 1.3e-18 95.5 58 79.3
CARHR090510 Cardamine hirsuta HOM05D003434 ORTHO05D004465 1.3e-18 95.5 58 82.8
FAN25G0934 Fragaria x ananassa HOM05D003434 ORTHO05D004465 1.3e-18 95.5 58 81.0
Sp3g13710 Schrenkiella parvula HOM05D003434 ORTHO05D004465 1.3e-18 95.5 58 82.8
THA.LOC104815549 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 1.3e-18 95.5 58 81.0
THA.LOC104818062 Tarenaya hassleriana HOM05D003434 ORTHO05D004465 1.3e-18 95.5 58 81.0
AL1G61260 Arabidopsis lyrata HOM05D003434 ORTHO05D004465 1.8e-18 95.1 58 82.8
Hma1.2p1_1789F.1_g302480 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 1.8e-18 95.1 58 77.6
Sed0008309 Sechium edule HOM05D003434 ORTHO05D004465 1.8e-18 95.1 58 77.6
Aqoxy4G01062 Aquilegia oxysepala HOM05D003434 ORTHO05D004465 2.3e-18 94.7 58 77.6
PSO017G4384 Papaver somniferum HOM05D003434 ORTHO05D004465 2.3e-18 94.7 57 80.7
PSO170G0766 Papaver somniferum HOM05D003434 ORTHO05D004465 2.3e-18 94.7 57 80.7
Carub.0003s1518 Capsella rubella HOM05D003434 ORTHO05D004465 3.0e-18 94.4 58 81.0
Dinv08315 Davidia involucrata HOM05D003434 ORTHO05D002822 3.0e-18 94.4 58 77.6
FvH4_3g20570 Fragaria vesca HOM05D003434 ORTHO05D004465 3.0e-18 94.4 58 81.0
FAN11G3195 Fragaria x ananassa HOM05D003434 ORTHO05D004465 3.0e-18 94.4 58 81.0
FAN21G0310 Fragaria x ananassa HOM05D003434 ORTHO05D004465 3.0e-18 94.4 58 81.0
RcHm_v2.0_Chr5g0034581 Rosa chinensis HOM05D003434 ORTHO05D004465 3.0e-18 94.4 58 81.0
Aa31LG10G2140 Aethionema arabicum HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
Aa31LG8G2690 Aethionema arabicum HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
AT3G15460 Arabidopsis thaliana HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BcaB06g29576 Brassica carinata HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BcaB06g29579 Brassica carinata HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BcaC01g03873 Brassica carinata HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BcaC09g48510 Brassica carinata HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
A01p38760 Brassica napus HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
A03p39310 Brassica napus HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
A05p33960 Brassica napus HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
C01p49000 Brassica napus HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
C03p47690 Brassica napus HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
C05p51700 Brassica napus HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BolC1t04864H Brassica oleracea HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BolC3t17044H Brassica oleracea HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BolC5t33857H Brassica oleracea HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BraA01t03909Z Brassica rapa HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BraA03t13081Z Brassica rapa HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
BraA05t22218Z Brassica rapa HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
Hma1.2p1_2288F.1_g318950 Hydrangea macrophylla HOM05D003434 ORTHO05D004465 3.9e-18 94.0 57 78.9
Sp1g39500 Schrenkiella parvula HOM05D003434 ORTHO05D004465 3.9e-18 94.0 58 81.0
CARHR043150 Cardamine hirsuta HOM05D003434 ORTHO05D004465 5.1e-18 93.6 58 81.0
Thhalv10011666m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 5.1e-18 93.6 58 81.0
PSO210G2253 Papaver somniferum HOM05D003434 ORTHO05D004465 5.1e-18 93.6 58 75.9
BcaB04g20924 Brassica carinata HOM05D003434 ORTHO05D004465 8.7e-18 92.8 58 79.3
Oeu011677.2 Olea europaea HOM05D003434 ORTHO05D004465 8.7e-18 92.8 58 77.6
Cpa.g.sc80.31 Carica papaya HOM05D003434 ORTHO05D004465 1.1e-17 92.4 58 77.6
Migut.H01924 Erythranthe guttata HOM05D003434 ORTHO05D004465 1.1e-17 92.4 58 75.9
Sabra16G0264800 Salix brachista HOM05D003434 ORTHO05D004465 1.1e-17 92.4 58 79.3
EL10Ac9g22818 Beta vulgaris HOM05D003434 ORTHO05D004465 1.5e-17 92.0 58 79.3
MBI01_g15748_MAGBIO Magnolia biondii HOM05D003434 ORTHO05D004465 1.5e-17 92.0 58 77.6
Peaxi162Scf00130g00826 Petunia axillaris HOM05D003434 ORTHO05D004465 1.5e-17 92.0 58 75.9
Thhalv10021159m.g Eutrema salsugineum HOM05D003434 ORTHO05D004465 1.9e-17 91.7 58 79.3
Oeu019344.1 Olea europaea HOM05D003434 ORTHO05D004465 2.5e-17 91.3 58 77.6
Rhsim06G0196400 Rhododendron simsii HOM05D003434 ORTHO05D004465 3.3e-17 90.9 58 77.6
vmacro19412 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 3.3e-17 90.9 58 77.6
TWI38G2119 Tripterygium wilfordii HOM05D003434 ORTHO05D004465 4.3e-17 90.5 58 74.1
AUR62015117 Chenopodium quinoa HOM05D003434 ORTHO05D004465 5.7e-17 90.1 58 75.9
AUR62017579 Chenopodium quinoa HOM05D003434 ORTHO05D004465 5.7e-17 90.1 58 75.9
DCAR_020982 Daucus carota HOM05D003434 ORTHO05D004465 5.7e-17 90.1 58 74.1
FAN16G2559 Fragaria x ananassa HOM05D003434 ORTHO05D004465 5.7e-17 90.1 58 77.6
SalBow4G3038 Salvia bowleyana HOM05D003434 ORTHO05D004465 5.7e-17 90.1 58 75.9
CDE07G1591 Ceratophyllum demersum HOM05D003434 ORTHO05D004465 9.6e-17 89.4 58 74.1
SGA_v2.0_scaffold9G04937 Striga asiatica HOM05D003434 ORTHO05D004465 9.6e-17 89.4 72 63.9
TAR624G0430 Trochodendron aralioides HOM05D003434 ORTHO05D004465 9.6e-17 89.4 58 74.1
vmacro11838 Vaccinium macrocarpon HOM05D003434 ORTHO05D004465 9.6e-17 89.4 58 75.9
SEGI_09483 Sequoiadendron giganteum HOM05D003434 ORTHO05D004465 1.6e-16 88.6 58 72.4
Sopen04g008470 Solanum pennellii HOM05D003434 ORTHO05D004465 2.1e-16 88.2 79 58.2
TAR626G1243 Trochodendron aralioides HOM05D003434 ORTHO05D004465 2.8e-16 87.8 58 72.4
DCAR_019543 Daucus carota HOM05D003434 ORTHO05D004465 4.8e-16 87.0 58 69.0
Zm00001eb183430 Zea mays HOM05D003434 ORTHO05D004465 8.2e-16 86.3 58 72.4
ATR0605G144 Amborella trichopoda HOM05D003434 ORTHO05D004465 1.8e-15 85.1 58 72.4
Os02g0591800 Oryza sativa ssp. japonica HOM05D003434 ORTHO05D004465 2.4e-15 84.7 58 70.7
HPP92_020071 Vanilla planifolia HOM05D003434 ORTHO05D004465 2.4e-15 84.7 58 70.7
Zm00001eb245760 Zea mays HOM05D003434 ORTHO05D004465 5.3e-15 83.6 56 71.4
unitig_0.g2416 Utricularia gibba HOM05D003434 ORTHO05D004465 2.0e-14 81.6 58 69.0
SMO353G0304 Selaginella moellendorffii HOM05D003434 ORTHO05D004465 2.2e-13 78.2 58 65.5
CsaV3_5G020630 Cucumis sativus L. HOM05D003434 ORTHO05D004465 2.5e-12 74.7 39 84.6
AagrBONN_evm.TU.Sc2ySwM_344.2838 Anthoceros agrestis HOM05D003434 ORTHO05D004465 5.5e-12 73.6 58 65.5
Mapoly0044s0007 Marchantia polymorpha HOM05D003434 ORTHO05D004465 7.1e-12 73.2 58 62.1
MELO3C034411.2 Cucumis melo HOM05D003434 ORTHO05D000610 2.1e-11 71.6 44 75.0
Gohir.A04G028400 Gossypium hirsutum HOM05D003434 ORTHO05D004465 3.5e-11 70.9 58 65.5
Pp3c16_10600 Physcomitrium patens HOM05D003434 ORTHO05D004465 3.5e-11 70.9 58 62.1
MELO3C030248.2 Cucumis melo HOM05D003434 ORTHO05D000610 5.1e-10 67.0 41 73.2
Cre02.g095400 Chlamydomonas reinhardtii HOM05D003434 ORTHO05D004465 2.5e-09 64.7 58 55.2
MCO15G262 Micromonas commoda HOM05D003434 ORTHO05D004465 2.5e-09 64.7 56 57.1
PRCOL_00005895 Prasinoderma coloniale HOM05D003434 ORTHO05D004465 3.3e-09 64.3 58 58.6
SEGI_41466 Sequoiadendron giganteum HOM05D003434 ORTHO05D000001 1.3e-08 62.4 48 64.6
Haze_26676 Corylus avellana HOM05D003434 ORTHO05D004465 2.0e-06 55.1 52 51.9
Cfa025477 Carpinus fangiana HOM05D003434 ORTHO05D004465 5.9e-06 53.5 57 45.6


User provided reference genes

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