Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 0.0e+00 3298.4 1702 100.0
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 0.0e+00 2527.7 1712 77.7
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 0.0e+00 2407.1 1560 80.6
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 0.0e+00 2063.9 1718 64.3
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 0.0e+00 1930.6 1714 62.0
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 0.0e+00 1921.0 1684 62.5
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 0.0e+00 1904.8 1685 61.8
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 0.0e+00 1228.0 1516 48.9
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 9.7e-309 1064.3 1750 40.2
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 1.0e-305 1054.3 1739 40.8
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 8.0e-303 1044.6 1500 44.1
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 2.0e-301 1040.0 1495 44.4
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 5.9e-298 1028.5 1550 41.4
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 4.9e-292 1008.8 1746 39.0
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 4.7e-279 965.7 1747 38.3
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 4.6e-274 949.1 1776 36.8
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.3e-270 936.8 1755 36.9
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.6e-266 924.1 1753 36.8
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 5.6e-264 915.6 1475 40.0
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 6.4e-260 902.1 1769 36.1
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 2.1e-255 887.1 1639 37.9
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 2.8e-255 886.7 1767 37.4
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.4e-254 884.4 1747 36.2
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 4.9e-252 875.9 1783 36.2
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 1.1e-246 858.2 1654 36.5
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 1.2e-245 854.7 1768 37.4
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 5.6e-240 835.9 1758 35.9
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 1.3e-233 814.7 1744 34.2
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 1.9e-227 794.3 1766 34.9
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 2.2e-215 754.2 1776 33.2
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 4.8e-215 753.1 1163 41.6
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 6.3e-215 752.7 1158 41.7
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 2.0e-213 747.7 1768 34.6
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 9.4e-211 738.8 1755 33.9
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 7.9e-210 735.7 1779 33.0
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 5.3e-206 723.0 1756 33.0
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 3.4e-205 720.3 1770 33.3
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 4.7e-202 709.9 1756 32.6
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 6.1e-202 709.5 1765 32.9
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 8.8e-201 705.7 1776 32.9
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 2.8e-199 700.7 1769 33.1
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.1e-195 688.7 1749 32.1
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 3.2e-195 687.2 1769 32.4
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 1.2e-194 685.3 1580 32.9
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.7e-194 684.1 1719 31.7
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 5.7e-192 676.4 1772 32.6
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.3e-191 675.2 1746 31.8
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 2.8e-191 674.1 1732 32.5
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 1.4e-190 671.8 1777 32.6
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 9.1e-190 669.1 1760 32.2
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 2.0e-189 667.9 1733 32.1
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 4.5e-189 666.8 1742 32.7
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 5.9e-189 666.4 1563 33.3
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 3.8e-188 663.7 1762 32.1
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 1.6e-186 658.3 1758 32.3
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.8e-185 652.9 1745 32.4
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 1.5e-184 651.7 1799 32.0
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 3.4e-184 650.6 1824 31.2
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 4.4e-184 650.2 1749 32.2
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 5.7e-184 649.8 1743 32.0
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 4.8e-183 646.7 1728 32.1
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 6.3e-183 646.4 1770 31.8
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.3e-183 646.4 1737 32.6
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 1.8e-182 644.8 1764 31.5
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 1.7e-180 638.3 1558 32.3
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.3e-180 637.9 1761 31.9
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 2.9e-180 637.5 1794 31.1
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 2.4e-174 617.8 480 70.2
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 2.8e-170 604.4 1713 31.0
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.6e-170 604.0 1794 30.6
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 1.4e-169 602.1 1775 30.3
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.5e-165 587.4 1697 30.7
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 3.6e-162 577.4 1801 30.0
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 9.8e-160 569.3 1737 30.2
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.0e-156 557.8 1179 34.3
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 6.2e-154 550.1 728 47.7
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 1.1e-150 539.3 781 43.9
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 8.6e-148 529.6 822 41.1
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 1.3e-143 515.8 1729 28.0
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.8e-138 498.0 1323 32.2
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 1.8e-121 442.2 920 34.9
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 1.3e-116 426.0 1446 28.6
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 3.3e-115 421.4 1769 26.9
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 3.7e-114 417.9 762 35.3
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 3.7e-114 417.9 1769 27.2
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.7e-111 409.1 965 33.7
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 3.8e-111 407.9 1738 27.6
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 1.4e-110 406.0 1727 25.1
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 1.0e-108 399.8 1851 26.1
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 8.7e-108 396.7 1735 25.0
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 9.7e-107 393.3 690 39.0
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.2e-106 392.1 751 38.3
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 1.7e-103 382.5 667 40.2
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 2.2e-103 382.1 714 35.3
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 3.6e-101 374.8 673 38.6
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 7.9e-101 373.6 726 37.6
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 6.7e-100 370.5 694 37.3
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 8.2e-98 363.6 735 36.1
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 1.7e-95 355.9 744 35.9
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 1.1e-94 353.2 735 35.8
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 4.7e-85 321.2 797 32.2
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 8.0e-77 293.9 686 33.1
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.9e-70 272.7 503 38.8
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 1.7e-50 206.5 607 30.1
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 3.6e-45 188.7 528 28.8
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 7.5e-43 181.0 508 30.5
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 3.7e-42 178.7 288 37.2
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 3.0e-39 169.1 155 55.5
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.9e-39 168.7 585 28.5
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 8.9e-36 157.5 214 42.1
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 6.4e-34 151.4 224 36.6
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 2.1e-29 136.3 223 32.3
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 2.4e-25 122.9 100 63.0
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 2.1e-24 119.8 163 39.3
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 1.2e-19 104.0 313 32.6
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 2.2e-18 99.8 97 59.8
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 3.2e-17 95.9 262 30.2
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 1.1e-14 87.4 208 34.6
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 4.3e-14 85.5 244 33.6
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 5.6e-14 85.1 214 31.3
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.8e-12 80.1 287 26.8
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 2.4e-12 79.7 312 22.8
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 5.3e-12 78.6 137 35.0
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 6.9e-12 78.2 180 38.3
Lalb_Chr19g0130851 Lupinus albus HOM05D005579 ORTHO05D006775 7.6e-11 74.7 56 71.4
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.7e-10 73.6 201 31.8
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.2e-09 69.3 84 50.0
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 5.4e-09 68.6 93 44.1
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 3.5e-08 65.9 144 29.2
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.3e-07 63.2 92 42.4
arahy.Tifrunner.gnm1.ann1.G92CPV Arachis hypogaea HOM05D005579 ORTHO05D006775 1.1e-06 60.8 83 53.0


User provided reference genes

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