Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10598 Trifolium pratense HOM05D002415 ORTHO05D002522 2.1e-45 185.3 89 100.0
Psat5g061040 Pisum sativum HOM05D002415 ORTHO05D002522 2.2e-26 122.1 92 60.9
TPR.G10025 Trifolium pratense HOM05D002415 ORTHO05D002522 2.0e-24 115.5 80 70.0
TPR.G34640 Trifolium pratense HOM05D002415 ORTHO05D002522 2.0e-24 115.5 88 64.8
Ca_16928_v3 Cicer arietinum L. HOM05D002415 ORTHO05D002522 3.8e-23 111.3 92 59.8
Phvul.009G148600 Phaseolus vulgaris HOM05D002415 ORTHO05D002522 1.7e-18 95.9 100 47.0
Medtr3g095830 Medicago truncatula HOM05D002415 ORTHO05D002522 2.8e-18 95.1 89 52.8
VMungo1309G0076 Vigna mungo HOM05D002415 ORTHO05D002522 9.1e-17 90.1 96 46.9
Medtr3g095840 Medicago truncatula HOM05D002415 ORTHO05D002522 1.2e-16 89.7 99 47.5
CiPaw.03G128200 Carya illinoinensis HOM05D002415 ORTHO05D002522 1.0e-15 86.7 93 48.4
Lj1g0016737 Lotus japonicus HOM05D002415 ORTHO05D002522 1.3e-15 86.3 88 46.6
Glyma.06G151500 Glycine max HOM05D002415 ORTHO05D002522 1.7e-15 85.9 88 45.5
THA.LOC104819316 Tarenaya hassleriana HOM05D002415 ORTHO05D002522 2.9e-15 85.1 91 48.4
Glyma.04G214600 Glycine max HOM05D002415 ORTHO05D002522 5.0e-15 84.3 91 46.2
FvH4_1g24041 Fragaria vesca HOM05D002415 ORTHO05D002522 6.6e-15 84.0 94 48.9
Lj6g0011498 Lotus japonicus HOM05D002415 ORTHO05D002522 6.6e-15 84.0 56 60.7
Gohir.D11G229600 Gossypium hirsutum HOM05D002415 ORTHO05D002522 1.1e-14 83.2 89 47.2
RcHm_v2.0_Chr2g0120191 Rosa chinensis HOM05D002415 ORTHO05D002522 1.1e-14 83.2 90 47.8
Atru.chr4.823 Acer truncatum HOM05D002415 ORTHO05D002522 1.5e-14 82.8 92 46.7
Ciclev10025879m.g Citrus clementina HOM05D002415 ORTHO05D002522 1.5e-14 82.8 87 47.1
Duzib147G0942 Durio zibethinus HOM05D002415 ORTHO05D002522 1.5e-14 82.8 56 60.7
GSVIVG01026529001 Vitis vinifera HOM05D002415 ORTHO05D002522 1.9e-14 82.4 92 47.8
arahy.Tifrunner.gnm1.ann1.655WP4 Arachis hypogaea HOM05D002415 ORTHO05D002522 2.5e-14 82.0 93 49.5
arahy.Tifrunner.gnm1.ann1.LSW17J Arachis hypogaea HOM05D002415 ORTHO05D002522 2.5e-14 82.0 93 49.5
FAN19G2964 Fragaria x ananassa HOM05D002415 ORTHO05D002522 2.5e-14 82.0 94 47.9
Lalb_Chr23g0272551 Lupinus albus HOM05D002415 ORTHO05D002522 2.5e-14 82.0 90 44.4
Manes.13G082300 Manihot esculenta HOM05D002415 ORTHO05D002522 2.5e-14 82.0 56 60.7
MELO3C023256.2 Cucumis melo HOM05D002415 ORTHO05D002522 4.2e-14 81.3 90 46.7
CsaV3_2G018160 Cucumis sativus L. HOM05D002415 ORTHO05D002522 4.2e-14 81.3 90 46.7
MD01G1012000 Malus domestica HOM05D002415 ORTHO05D002522 4.2e-14 81.3 56 60.7
Lalb_Chr08g0238501 Lupinus albus HOM05D002415 ORTHO05D002522 5.5e-14 80.9 98 48.0
ClCG02G000610 Citrullus lanatus HOM05D002415 ORTHO05D002522 1.2e-13 79.7 90 44.4
QL06p029526 Quercus lobata HOM05D002415 ORTHO05D002522 1.2e-13 79.7 56 57.1
SHI11444 Sapria himalayana HOM05D002415 ORTHO05D002522 1.2e-13 79.7 56 57.1
Gohir.A11G222700 Gossypium hirsutum HOM05D002415 ORTHO05D002522 1.6e-13 79.3 56 58.9
Gorai.003G068200 Gossypium raimondii HOM05D002415 ORTHO05D002522 1.6e-13 79.3 56 58.9
MD15G1338000 Malus domestica HOM05D002415 ORTHO05D002522 2.1e-13 79.0 95 47.4
COL.COLO4_14015 Corchorus olitorius HOM05D002415 ORTHO05D002522 2.8e-13 78.6 89 43.8
Haze_25128 Corylus avellana HOM05D002415 ORTHO05D002522 4.7e-13 77.8 95 47.4
Manes.12G152800 Manihot esculenta HOM05D002415 ORTHO05D002522 6.1e-13 77.4 56 57.1
AUR62017918 Chenopodium quinoa HOM05D002415 ORTHO05D002522 8.0e-13 77.0 56 55.4
Ah.02g121900 Amaranthus hybridus HOM05D002415 ORTHO05D002522 1.4e-12 76.3 56 55.4
AUR62003607 Chenopodium quinoa HOM05D002415 ORTHO05D002522 1.8e-12 75.9 56 55.4
PGR102G2508 Punica granatum HOM05D002415 ORTHO05D002522 2.3e-12 75.5 63 50.8
Thecc.01G126800 Theobroma cacao HOM05D002415 ORTHO05D002522 2.3e-12 75.5 97 40.2
Dinv11311 Davidia involucrata HOM05D002415 ORTHO05D002522 3.0e-12 75.1 88 39.8
Sabra05G0050000 Salix brachista HOM05D002415 ORTHO05D002522 3.0e-12 75.1 56 53.6
TWI31G1475 Tripterygium wilfordii HOM05D002415 ORTHO05D002522 3.0e-12 75.1 56 57.1
Ah.03g146720 Amaranthus hybridus HOM05D002415 ORTHO05D002522 6.8e-12 73.9 51 52.9
EL10Ac6g15270 Beta vulgaris HOM05D002415 ORTHO05D002522 6.8e-12 73.9 85 38.8
Potri.005G058000 Populus trichocarpa HOM05D002415 ORTHO05D002522 6.8e-12 73.9 56 51.8
Potri.007G109900 Populus trichocarpa HOM05D002415 ORTHO05D002522 6.8e-12 73.9 88 39.8
Cpa.g.sc42.115 Carica papaya HOM05D002415 ORTHO05D002522 8.9e-12 73.6 56 53.6
Eucgr.H04938 Eucalyptus grandis HOM05D002415 ORTHO05D002522 8.9e-12 73.6 56 50.0
Sed0008135 Sechium edule HOM05D002415 ORTHO05D002522 8.9e-12 73.6 91 40.7
Sc07g0001680 Simmondsia chinensis HOM05D002415 ORTHO05D002522 8.9e-12 73.6 56 51.8
Sabra07G0089900 Salix brachista HOM05D002415 ORTHO05D002522 1.2e-11 73.2 56 50.0
Actinidia09830 Actinidia chinensis HOM05D002415 ORTHO05D002522 2.0e-11 72.4 73 45.2
Rhsim10G0137200 Rhododendron simsii HOM05D002415 ORTHO05D002522 2.0e-11 72.4 56 48.2
Actinidia06649 Actinidia chinensis HOM05D002415 ORTHO05D002522 3.4e-11 71.6 56 50.0
vmacro12858 Vaccinium macrocarpon HOM05D002415 ORTHO05D002522 5.7e-11 70.9 93 35.5
Aa31LG3G17320 Aethionema arabicum HOM05D002415 ORTHO05D002522 9.8e-11 70.1 58 55.2
TAR381G0984 Trochodendron aralioides HOM05D002415 ORTHO05D002522 8.3e-10 67.0 91 40.7
Thhalv10014318m.g Eutrema salsugineum HOM05D002415 ORTHO05D002522 4.1e-09 64.7 90 43.3
HanXRQChr14g0446681 Helianthus annuus HOM05D002415 ORTHO05D002522 4.1e-09 64.7 61 47.5
Nn5g28665 Nelumbo nucifera HOM05D002415 ORTHO05D002522 4.1e-09 64.7 56 50.0
AT5G09790 Arabidopsis thaliana HOM05D002415 ORTHO05D002522 7.0e-09 63.9 62 51.6
Thhalv10013971m.g Eutrema salsugineum HOM05D002415 ORTHO05D002522 7.0e-09 63.9 58 50.0
Lj4A849G56 Lonicera japonica HOM05D002415 ORTHO05D002522 9.2e-09 63.5 56 46.4
Nitab4.5_0002780g0070 Nicotiana tabacum HOM05D002415 ORTHO05D002522 1.6e-08 62.8 39 61.5
A10p27660 Brassica napus HOM05D002415 ORTHO05D002522 2.7e-08 62.0 58 48.3
BraA10t44818Z Brassica rapa HOM05D002415 ORTHO05D002522 2.7e-08 62.0 58 48.3
Lsat_1_v5_gn_2_64521 Lactuca sativa HOM05D002415 ORTHO05D002522 2.7e-08 62.0 57 45.6
CARHR203620 Cardamine hirsuta HOM05D002415 ORTHO05D002522 3.5e-08 61.6 58 46.6
Aqoxy6G00382 Aquilegia oxysepala HOM05D002415 ORTHO05D002522 4.5e-08 61.2 58 48.3
Cc02_g01230 Coffea canephora HOM05D002415 ORTHO05D002522 5.9e-08 60.8 38 63.2
Sp6g33610 Schrenkiella parvula HOM05D002415 ORTHO05D002522 5.9e-08 60.8 90 42.2
AL6G20190 Arabidopsis lyrata HOM05D002415 ORTHO05D002522 7.8e-08 60.5 93 41.9
BcaB08g37166 Brassica carinata HOM05D002415 ORTHO05D002522 5.0e-07 57.8 34 64.7
Nitab4.5_0005326g0040 Nicotiana tabacum HOM05D002415 ORTHO05D002522 5.0e-07 57.8 36 61.1
Potri.012G018300 Populus trichocarpa HOM05D002415 ORTHO05D002522 5.0e-07 57.8 35 62.9
Carub.0006s0820 Capsella rubella HOM05D002415 ORTHO05D002522 6.6e-07 57.4 92 41.3
Oeu047677.1 Olea europaea HOM05D002415 ORTHO05D002522 6.6e-07 57.4 63 39.7
Sopen03g022670 Solanum pennellii HOM05D002415 ORTHO05D002522 6.6e-07 57.4 40 55.0
BcaB08g37181 Brassica carinata HOM05D002415 ORTHO05D002522 8.6e-07 57.0 94 35.1
C09p67720 Brassica napus HOM05D002415 ORTHO05D002522 8.6e-07 57.0 94 35.1
BolC9t59534H Brassica oleracea HOM05D002415 ORTHO05D002522 8.6e-07 57.0 94 35.1
PGSC0003DMG400028656 Solanum tuberosum HOM05D002415 ORTHO05D002522 8.6e-07 57.0 35 60.0
ECA238G2304 Erigeron canadensis HOM05D002415 ORTHO05D002522 1.1e-06 56.6 36 55.6
Migut.F00189 Erythranthe guttata HOM05D002415 ORTHO05D002522 1.1e-06 56.6 38 55.3
Lsat_1_v5_gn_2_135300 Lactuca sativa HOM05D002415 ORTHO05D002522 1.1e-06 56.6 38 57.9
Sabra12G0014200 Salix brachista HOM05D002415 ORTHO05D002522 1.1e-06 56.6 35 60.0
Atru.chr12.2266 Acer truncatum HOM05D002415 ORTHO05D002522 1.5e-06 56.2 39 53.8
CSS0015835 Camellia sinensis var. sinensis HOM05D002415 ORTHO05D002522 1.5e-06 56.2 38 50.0
Peaxi162Scf00740g00247 Petunia axillaris HOM05D002415 ORTHO05D002522 1.5e-06 56.2 36 55.6
Potri.015G009632 Populus trichocarpa HOM05D002415 ORTHO05D002522 1.5e-06 56.2 36 58.3
HanXRQChr04g0100461 Helianthus annuus HOM05D002415 ORTHO05D002522 1.9e-06 55.8 38 57.9
MBI12_g21747_MAGBIO Magnolia biondii HOM05D002415 ORTHO05D002522 1.9e-06 55.8 44 54.5
MBI12_g43642_MAGBIO Magnolia biondii HOM05D002415 ORTHO05D002522 1.9e-06 55.8 44 54.5
Nitab4.5_0002121g0020 Nicotiana tabacum HOM05D002415 ORTHO05D002522 1.9e-06 55.8 90 37.8
PSO063G1257 Papaver somniferum HOM05D002415 ORTHO05D002522 1.9e-06 55.8 40 55.0
BcaC03g13275 Brassica carinata HOM05D002415 ORTHO05D002522 2.5e-06 55.5 34 61.8
A02p00150 Brassica napus HOM05D002415 ORTHO05D002522 2.5e-06 55.5 34 61.8
C02p04060 Brassica napus HOM05D002415 ORTHO05D002522 2.5e-06 55.5 43 55.8
BraA02t04999Z Brassica rapa HOM05D002415 ORTHO05D002522 2.5e-06 55.5 34 61.8
CSS0023308 Camellia sinensis var. sinensis HOM05D002415 ORTHO05D002522 2.5e-06 55.5 37 56.8
MELO3C005903.2 Cucumis melo HOM05D002415 ORTHO05D002522 2.5e-06 55.5 37 54.1
Nn3g18920 Nelumbo nucifera HOM05D002415 ORTHO05D002522 2.5e-06 55.5 37 56.8
PGR042G1881 Punica granatum HOM05D002415 ORTHO05D002522 2.5e-06 55.5 37 54.1
Solyc03g082860.3 Solanum lycopersicum HOM05D002415 ORTHO05D002522 2.5e-06 55.5 40 52.5
unitig_62.g23849 Utricularia gibba HOM05D002415 ORTHO05D002522 2.5e-06 55.5 38 55.3
MSTRG.2668 Avicennia marina HOM05D002415 ORTHO05D002522 3.3e-06 55.1 66 40.9
CDE02G4793 Ceratophyllum demersum HOM05D002415 ORTHO05D002522 3.3e-06 55.1 36 63.9
SEGI_03136 Sequoiadendron giganteum HOM05D002415 ORTHO05D002522 3.3e-06 55.1 32 59.4
GSVIVG01038589001 Vitis vinifera HOM05D002415 ORTHO05D002522 3.3e-06 55.1 34 61.8
Actinidia02449 Actinidia chinensis HOM05D002415 ORTHO05D002522 4.3e-06 54.7 37 54.1
Actinidia34239 Actinidia chinensis HOM05D002415 ORTHO05D002522 4.3e-06 54.7 37 56.8
MSTRG.8636 Avicennia marina HOM05D002415 ORTHO05D002522 4.3e-06 54.7 38 55.3
BcaB05g21529 Brassica carinata HOM05D002415 ORTHO05D002522 4.3e-06 54.7 34 58.8
Dinv35355 Davidia involucrata HOM05D002415 ORTHO05D002522 4.3e-06 54.7 34 61.8
BolC2t06368H Brassica oleracea HOM05D002415 ORTHO05D002522 5.6e-06 54.3 93 34.4
PSO170G0223 Papaver somniferum HOM05D002415 ORTHO05D002522 5.6e-06 54.3 40 52.5
Sabra15G0007600 Salix brachista HOM05D002415 ORTHO05D002522 5.6e-06 54.3 36 55.6
CDE04G2616 Ceratophyllum demersum HOM05D002415 ORTHO05D002522 7.3e-06 53.9 89 34.8
Nitab4.5_0004813g0030 Nicotiana tabacum HOM05D002415 ORTHO05D002522 7.3e-06 53.9 90 37.8
Oeu037796.1 Olea europaea HOM05D002415 ORTHO05D002522 7.3e-06 53.9 63 41.3
Solyc11g005730.3 Solanum lycopersicum HOM05D002415 ORTHO05D002522 7.3e-06 53.9 36 52.8
Sopen11g001690 Solanum pennellii HOM05D002415 ORTHO05D002522 7.3e-06 53.9 36 52.8
vmacro06401 Vaccinium macrocarpon HOM05D002415 ORTHO05D002522 7.3e-06 53.9 41 51.2
HPP92_007148 Vanilla planifolia HOM05D002415 ORTHO05D002522 7.3e-06 53.9 31 67.7
CSS0037563 Camellia sinensis var. sinensis HOM05D002415 ORTHO05D002522 9.5e-06 53.5 37 54.1
Ciclev10020975m.g Citrus clementina HOM05D002415 ORTHO05D002522 9.5e-06 53.5 38 60.5
Migut.H00744 Erythranthe guttata HOM05D002415 ORTHO05D002522 9.5e-06 53.5 64 40.6
SGA_v2.0_scaffold192G40518 Striga asiatica HOM05D002415 ORTHO05D002522 9.5e-06 53.5 37 56.8


User provided reference genes

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