Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 1.5e-104 382.9 197 100.0
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 3.5e-93 345.1 191 90.6
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 1.6e-90 336.3 196 86.2
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 2.8e-90 335.5 192 87.5
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 2.8e-90 335.5 196 85.7
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 8.0e-90 334.0 180 92.2
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.2e-88 330.1 196 84.7
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 4.1e-86 321.6 192 82.8
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 7.0e-86 320.9 192 82.8
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.6e-85 319.7 191 82.2
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 5.1e-84 314.7 196 80.1
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 6.6e-84 314.3 191 82.7
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 1.1e-83 313.5 191 82.2
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 2.5e-83 312.4 193 81.9
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 2.5e-83 312.4 192 80.7
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.8e-82 308.9 191 80.1
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 2.8e-82 308.9 191 80.1
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 4.7e-82 308.1 191 81.7
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 1.1e-81 307.0 190 80.5
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 1.1e-81 307.0 195 80.0
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 1.1e-81 307.0 190 80.5
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 1.4e-81 306.6 190 81.1
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 1.4e-81 306.6 191 79.6
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.8e-81 306.2 187 81.3
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 1.8e-81 306.2 187 84.0
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 1.8e-81 306.2 197 77.2
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 5.2e-81 304.7 197 77.2
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 6.8e-81 304.3 197 76.6
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 8.9e-81 303.9 197 76.6
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 1.5e-80 303.1 197 76.1
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 2.6e-80 302.4 193 77.7
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 4.4e-80 301.6 191 79.6
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 7.5e-80 300.8 190 78.9
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 9.9e-80 300.4 188 80.9
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 1.3e-79 300.1 197 75.6
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 2.2e-79 299.3 193 79.3
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 6.4e-79 297.7 197 77.7
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 6.4e-79 297.7 191 77.5
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 1.1e-78 297.0 195 79.5
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 1.4e-78 296.6 192 76.6
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.9e-78 296.2 191 77.0
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 1.9e-78 296.2 187 80.2
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 2.4e-78 295.8 218 72.0
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 4.1e-78 295.0 191 76.4
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 7.1e-78 294.3 191 79.1
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 1.2e-77 293.5 192 78.6
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 1.2e-77 293.5 189 77.8
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 2.1e-77 292.7 193 77.2
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 6.0e-77 291.2 190 77.4
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 1.3e-76 290.0 191 79.1
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 1.7e-76 289.7 196 74.5
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 1.7e-76 289.7 197 72.6
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 3.0e-76 288.9 187 79.1
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 5.1e-76 288.1 249 63.5
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 8.6e-76 287.3 252 63.1
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 1.9e-75 286.2 191 73.3
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 5.6e-75 284.6 192 72.9
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 5.6e-75 284.6 192 78.1
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.2e-74 283.5 186 77.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.6e-74 283.1 188 73.4
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.6e-74 283.1 188 73.4
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 2.8e-74 282.3 190 74.2
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.6e-74 282.0 188 72.9
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 8.1e-74 280.8 191 73.3
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 1.8e-73 279.6 190 73.2
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 1.8e-73 279.6 190 73.2
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.8e-73 279.6 197 73.1
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 3.1e-73 278.9 193 74.6
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 4.0e-73 278.5 191 72.3
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 4.0e-73 278.5 191 72.3
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 5.2e-73 278.1 191 72.3
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 8.9e-73 277.3 191 72.3
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 8.9e-73 277.3 190 74.2
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.2e-72 276.9 194 71.6
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 1.5e-72 276.6 187 75.9
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 1.5e-72 276.6 191 72.8
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 2.6e-72 275.8 182 76.4
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.3e-71 273.5 194 72.2
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 3.8e-71 271.9 190 71.6
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 3.8e-71 271.9 192 76.0
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 6.4e-71 271.2 190 71.6
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.1e-70 270.4 190 72.1
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.1e-70 270.4 186 72.6
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 1.4e-70 270.0 194 71.6
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 5.1e-68 261.5 201 69.2
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 2.5e-67 259.2 161 80.1
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 3.3e-67 258.8 191 67.0
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 4.3e-67 258.5 188 72.3
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 3.5e-61 238.8 164 70.7
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 3.0e-60 235.7 185 65.4
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 5.6e-59 231.5 187 62.6
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 3.1e-57 225.7 148 75.7
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 4.0e-57 225.3 185 63.2
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 4.0e-57 225.3 186 64.5
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.6e-56 222.6 159 73.6
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.8e-55 218.8 186 63.4
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 4.2e-54 215.3 135 79.3
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.4e-54 214.9 190 62.1
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 3.3e-51 205.7 141 76.6
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 8.1e-50 201.1 130 79.2
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 2.6e-48 196.1 121 84.3
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 1.4e-46 190.3 252 49.6
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.4e-46 190.3 109 86.2
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 6.7e-44 181.4 135 69.6
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 8.7e-44 181.0 112 82.1
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 2.5e-43 179.5 113 77.0
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 5.8e-40 168.3 198 49.0
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 4.6e-37 158.7 110 72.7
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.3e-36 157.1 199 46.2
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 5.1e-36 155.2 84 89.3
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 9.7e-35 151.0 111 70.3
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 1.3e-34 150.6 105 71.4
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 6.3e-34 148.3 137 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 6.1e-29 131.7 132 53.8
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 2.9e-23 112.8 140 51.4
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 1.6e-21 107.1 133 47.4
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 5.1e-20 102.1 62 80.6
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 8.2e-18 94.7 201 32.8
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.4e-17 94.0 81 56.8
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 5.5e-14 82.0 74 55.4
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 8.8e-12 74.7 50 66.0
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 1.1e-11 74.3 52 69.2
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 1.3e-10 70.9 109 42.2
LjContig00564g0014639 Lotus japonicus HOM05D002009 ORTHO05D030873 1.1e-06 57.8 40 65.0
Psat1g011800 Pisum sativum HOM05D006947 ORTHO05D008818 1.5e-06 57.4 51 56.9
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 9.4e-06 54.7 54 48.1


User provided reference genes

Program Settings