Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10129 Trifolium pratense HOM05D001978 ORTHO05D003036 5.0e-108 394.4 196 100.0
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 5.8e-24 115.2 140 51.4
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 5.8e-24 115.2 140 51.4
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 7.6e-24 114.8 145 47.6
Glyma.12G010300 Glycine max HOM05D001978 ORTHO05D003036 1.0e-23 114.4 141 48.9
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 1.0e-23 114.4 146 49.3
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 1.3e-23 114.0 141 48.2
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 3.8e-23 112.5 141 48.2
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 4.9e-23 112.1 146 50.0
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 1.2e-21 107.5 141 51.8
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 2.7e-21 106.3 146 46.6
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 2.7e-21 106.3 146 46.6
TPR.G20258 Trifolium pratense HOM05D001978 ORTHO05D003036 9.7e-19 97.8 57 84.2
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 1.6e-18 97.1 147 46.3
TPR.G3047 Trifolium pratense HOM05D001978 ORTHO05D003036 6.3e-18 95.1 138 45.7
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 5.3e-17 92.0 147 46.3
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 1.5e-16 90.5 146 41.1
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 7.7e-16 88.2 156 41.0
QL06p019642 Quercus lobata HOM05D001978 ORTHO05D003036 2.9e-15 86.3 149 40.9
TPR.G8350 Trifolium pratense HOM05D001978 ORTHO05D003036 3.8e-15 85.9 127 44.1
Lj9A642G52 Lonicera japonica HOM05D001978 ORTHO05D003036 1.9e-14 83.6 153 41.2
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 1.9e-14 83.6 143 42.0
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 2.5e-14 83.2 151 39.1
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 3.2e-14 82.8 146 41.8
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 4.2e-14 82.4 149 37.6
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 4.2e-14 82.4 146 38.4
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 7.2e-14 81.6 150 38.0
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 7.2e-14 81.6 151 41.7
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 7.2e-14 81.6 151 41.7
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 9.4e-14 81.3 146 43.8
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 9.4e-14 81.3 149 37.6
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 1.2e-13 80.9 147 42.2
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 1.2e-13 80.9 146 41.8
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 1.6e-13 80.5 158 37.3
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 1.6e-13 80.5 151 41.1
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 2.7e-13 79.7 137 40.1
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 2.7e-13 79.7 146 37.0
Gohir.A11G073600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.6e-13 79.3 48 83.3
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 3.6e-13 79.3 151 40.4
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 4.6e-13 79.0 146 39.0
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 6.1e-13 78.6 150 37.3
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 6.1e-13 78.6 150 37.3
Dinv07425 Davidia involucrata HOM05D001978 ORTHO05D003036 6.1e-13 78.6 151 38.4
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 1.0e-12 77.8 146 39.7
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 1.0e-12 77.8 151 40.4
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 1.8e-12 77.0 49 77.6
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 1.8e-12 77.0 146 39.7
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 2.3e-12 76.6 45 86.7
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 2.3e-12 76.6 151 37.1
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 2.3e-12 76.6 45 86.7
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.3e-12 76.6 45 86.7
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.3e-12 76.6 45 86.7
Psat6g024720 Pisum sativum HOM05D001978 ORTHO05D003036 2.3e-12 76.6 45 86.7
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 3.0e-12 76.3 141 39.0
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 5.1e-12 75.5 150 36.7
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 5.1e-12 75.5 155 39.4
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 6.7e-12 75.1 45 84.4
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 8.8e-12 74.7 48 77.1
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 8.8e-12 74.7 48 77.1
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 8.8e-12 74.7 48 77.1
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 8.8e-12 74.7 45 84.4
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 8.8e-12 74.7 45 82.2
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 8.8e-12 74.7 48 77.1
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 8.8e-12 74.7 45 84.4
TPR.G35927 Trifolium pratense HOM05D001978 ORTHO05D003036 8.8e-12 74.7 41 90.2
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 1.1e-11 74.3 45 82.2
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 1.1e-11 74.3 155 38.1
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 1.5e-11 73.9 44 86.4
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 82.2
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 82.2
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 82.2
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.5e-11 73.9 48 75.0
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 82.2
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 82.2
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 80.0
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 82.2
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 80.0
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 1.5e-11 73.9 41 85.4
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 84.4
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 1.5e-11 73.9 45 82.2
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 2.5e-11 73.2 45 82.2
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.5e-11 73.2 40 90.0
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 3.3e-11 72.8 149 36.9
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 4.3e-11 72.4 46 78.3
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 4.3e-11 72.4 45 80.0
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 4.3e-11 72.4 45 80.0
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 4.3e-11 72.4 45 80.0
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 4.3e-11 72.4 45 80.0
Gohir.A12G100200 Gossypium hirsutum HOM05D001978 ORTHO05D003036 5.7e-11 72.0 45 77.8
TPR.G1017 Trifolium pratense HOM05D001978 ORTHO05D003036 5.7e-11 72.0 51 76.5
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 7.4e-11 71.6 45 75.6
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 7.4e-11 71.6 45 80.0
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 9.7e-11 71.2 45 80.0
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 9.7e-11 71.2 45 77.8
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 9.7e-11 71.2 49 71.4
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 1.3e-10 70.9 45 80.0
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.7e-10 70.5 40 87.5
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 2.2e-10 70.1 49 69.4
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 2.2e-10 70.1 44 81.8
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 2.2e-10 70.1 46 78.3
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 2.2e-10 70.1 155 34.8
vmacro21140 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 2.2e-10 70.1 156 36.5
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 2.8e-10 69.7 151 36.4
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 2.8e-10 69.7 139 33.1
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 2.8e-10 69.7 156 39.1
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 3.7e-10 69.3 138 35.5
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 3.7e-10 69.3 45 77.8
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 3.7e-10 69.3 45 77.8
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 3.7e-10 69.3 45 77.8
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 3.7e-10 69.3 45 77.8
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 4.8e-10 68.9 45 77.8
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 6.3e-10 68.6 51 74.5
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 1.1e-09 67.8 45 73.3
Psat7g013920 Pisum sativum HOM05D001978 ORTHO05D003036 1.1e-09 67.8 126 38.1
QL04p000034 Quercus lobata HOM05D001978 ORTHO05D003036 1.1e-09 67.8 52 71.2
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 1.4e-09 67.4 49 67.3
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 1.8e-09 67.0 48 68.8
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 1.8e-09 67.0 45 73.3
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 4.1e-09 65.9 45 71.1
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 4.1e-09 65.9 45 71.1
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 4.1e-09 65.9 45 71.1
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 4.1e-09 65.9 45 71.1
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 5.3e-09 65.5 45 73.3
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 5.3e-09 65.5 45 75.6
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 5.3e-09 65.5 153 34.0
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 9.1e-09 64.7 45 68.9
COL.COLO4_11232 Corchorus olitorius HOM05D001978 ORTHO05D018189 1.2e-08 64.3 40 82.5
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.2e-08 64.3 148 34.5
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 2.0e-08 63.5 45 71.1
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 2.0e-08 63.5 45 68.9
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 2.0e-08 63.5 156 35.3
vmacro10496 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 2.0e-08 63.5 172 35.5
ATR0057G059 Amborella trichopoda HOM05D001978 ORTHO05D003036 2.6e-08 63.2 48 62.5
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 2.6e-08 63.2 45 71.1
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 2.6e-08 63.2 45 71.1
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 3.4e-08 62.8 41 73.2
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 3.4e-08 62.8 45 71.1
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 3.4e-08 62.8 45 71.1
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 4.5e-08 62.4 45 66.7
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 4.5e-08 62.4 156 32.7
HPP92_001385 Vanilla planifolia HOM05D001978 ORTHO05D003036 4.5e-08 62.4 45 68.9
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 5.9e-08 62.0 45 66.7
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 5.9e-08 62.0 45 66.7
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 5.9e-08 62.0 48 60.4
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 7.7e-08 61.6 45 68.9
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 7.7e-08 61.6 45 66.7
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.0e-07 61.2 49 63.3
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 1.7e-07 60.5 45 64.4
Dinv43400 Davidia involucrata HOM05D001978 ORTHO05D003036 2.2e-07 60.1 150 34.0
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 2.2e-07 60.1 45 64.4
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 2.9e-07 59.7 39 79.5
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 3.8e-07 59.3 148 31.1
DCAR_022370 Daucus carota HOM05D001978 ORTHO05D003036 8.5e-07 58.2 49 63.3
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 1.1e-06 57.8 49 57.1
TPR.G4596 Trifolium pratense HOM05D001978 ORTHO05D003036 1.1e-06 57.8 49 61.2
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 1.4e-06 57.4 49 61.2
MELO3C029574.2 Cucumis melo HOM05D001978 ORTHO05D003036 1.9e-06 57.0 39 71.8
Ah.03g145440 Amaranthus hybridus HOM05D001978 ORTHO05D003036 2.5e-06 56.6 46 58.7
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 3.2e-06 56.2 49 57.1
COL.COLO4_03678 Corchorus olitorius HOM05D001978 ORTHO05D003036 3.2e-06 56.2 32 87.5
MELO3C029961.2 Cucumis melo HOM05D001978 ORTHO05D006669 3.2e-06 56.2 40 67.5
MELO3C035543.2 Cucumis melo HOM05D007786 ORTHO05D009980 3.2e-06 56.2 40 67.5
TPR.G30308 Trifolium pratense HOM05D001978 ORTHO05D003036 3.2e-06 56.2 59 55.9
BcaC07g38951 Brassica carinata HOM05D001978 ORTHO05D003036 4.2e-06 55.8 49 59.2
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 4.2e-06 55.8 49 61.2
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 4.2e-06 55.8 49 59.2
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 4.2e-06 55.8 49 59.2
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 4.2e-06 55.8 49 61.2


User provided reference genes

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