Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
THA.LOC104810366 Tarenaya hassleriana HOM05D005330 ORTHO05D006489 2.0e-209 732.3 387 100.0
Aa31LG10G1260 Aethionema arabicum HOM05D005330 ORTHO05D006489 1.1e-151 540.4 387 72.4
CARHR044500 Cardamine hirsuta HOM05D005330 ORTHO05D006489 2.0e-148 529.6 387 66.4
Sp1g40600 Schrenkiella parvula HOM05D005330 ORTHO05D006489 5.3e-146 521.5 387 64.3
Thhalv10011564m.g Eutrema salsugineum HOM05D005330 ORTHO05D006489 1.8e-141 506.5 388 62.4
BolC3t21521H Brassica oleracea HOM05D005330 ORTHO05D006489 1.5e-140 503.4 391 63.4
BraA08t32169Z Brassica rapa HOM05D005330 ORTHO05D006489 1.5e-140 503.4 388 63.4
C03p92030 Brassica napus HOM05D005330 ORTHO05D006489 2.6e-140 502.7 391 63.2
BcaB04g17020 Brassica carinata HOM05D005330 ORTHO05D006489 5.7e-140 501.5 388 62.4
BcaC01g01438 Brassica carinata HOM05D005330 ORTHO05D006489 5.7e-140 501.5 391 63.2
A08p01180 Brassica napus HOM05D005330 ORTHO05D006489 1.4e-138 496.9 391 61.9
BcaB07g33256 Brassica carinata HOM05D005330 ORTHO05D006489 2.9e-136 489.2 396 61.9
Cpa.g.sc25.125 Carica papaya HOM05D005330 ORTHO05D006489 6.1e-134 481.5 397 62.5
BcaC08g43595 Brassica carinata HOM05D005330 ORTHO05D006489 1.8e-133 479.9 396 60.4
C06p09930 Brassica napus HOM05D005330 ORTHO05D006489 1.8e-133 479.9 396 60.4
BolC6t36066H Brassica oleracea HOM05D005330 ORTHO05D006489 1.8e-133 479.9 396 60.4
AT1G54150 Arabidopsis thaliana HOM05D005330 ORTHO05D006489 8.9e-133 477.6 388 62.4
Carub.0001s4339 Capsella rubella HOM05D005330 ORTHO05D006489 2.6e-132 476.1 387 61.8
A06p00510 Brassica napus HOM05D005330 ORTHO05D006489 1.7e-131 473.4 399 59.4
BraA06t23266Z Brassica rapa HOM05D005330 ORTHO05D006489 1.7e-131 473.4 399 59.4
AL1G62870 Arabidopsis lyrata HOM05D005330 ORTHO05D006489 1.0e-128 464.2 388 60.8
Manes.11G019800 Manihot esculenta HOM05D005330 ORTHO05D006489 8.0e-126 454.5 394 62.2
Cfa003530 Carpinus fangiana HOM05D005330 ORTHO05D006489 6.4e-123 444.9 393 61.8
Thecc.06G120800 Theobroma cacao HOM05D005330 ORTHO05D006489 5.4e-122 441.8 392 57.1
Lalb_Chr04g0263541 Lupinus albus HOM05D005330 ORTHO05D006489 9.2e-122 441.0 390 59.7
GSVIVG01016752001 Vitis vinifera HOM05D005330 ORTHO05D006489 3.5e-121 439.1 392 54.8
Eucgr.F04419 Eucalyptus grandis HOM05D005330 ORTHO05D006489 4.6e-121 438.7 393 57.0
PGR119G1300 Punica granatum HOM05D005330 ORTHO05D006489 1.3e-120 437.2 404 57.7
Gohir.A10G053500 Gossypium hirsutum HOM05D005330 ORTHO05D006489 3.0e-120 436.0 392 55.9
Gohir.D10G055300 Gossypium hirsutum HOM05D005330 ORTHO05D006489 8.6e-120 434.5 392 55.6
Gorai.011G059000 Gossypium raimondii HOM05D005330 ORTHO05D006489 8.6e-120 434.5 392 55.6
Dinv20432 Davidia involucrata HOM05D005330 ORTHO05D006489 2.5e-119 433.0 395 57.0
vmacro15037 Vaccinium macrocarpon HOM05D005330 ORTHO05D006489 5.6e-119 431.8 392 56.9
CiPaw.01G218300 Carya illinoinensis HOM05D005330 ORTHO05D006489 8.0e-118 427.9 392 59.7
QL05p004250 Quercus lobata HOM05D005330 ORTHO05D006489 2.3e-117 426.4 416 56.2
Lj3g0015373 Lotus japonicus HOM05D005330 ORTHO05D006489 3.1e-117 426.0 390 59.0
Phvul.010G129300 Phaseolus vulgaris HOM05D005330 ORTHO05D006489 5.2e-117 425.2 392 55.9
TWI79G1442 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 5.8e-116 421.8 389 55.0
Haze_16035 Corylus avellana HOM05D005330 ORTHO05D006489 9.8e-116 421.0 453 54.1
Sc10g0007910 Simmondsia chinensis HOM05D005330 ORTHO05D006489 9.8e-116 421.0 390 57.7
Potri.003G065500 Populus trichocarpa HOM05D005330 ORTHO05D006489 1.3e-115 420.6 389 54.0
Cc04_g01320 Coffea canephora HOM05D005330 ORTHO05D006489 3.7e-115 419.1 397 56.2
Sed0005660 Sechium edule HOM05D005330 ORTHO05D006489 8.3e-115 417.9 407 55.3
DCAR_022693 Daucus carota HOM05D005330 ORTHO05D006489 2.4e-114 416.4 391 55.5
Glyma.18G149800 Glycine max HOM05D005330 ORTHO05D006489 2.4e-114 416.4 395 58.5
Sabra03G0038500 Salix brachista HOM05D005330 ORTHO05D006489 2.4e-114 416.4 391 52.9
ClCG09G000970 Citrullus lanatus HOM05D005330 ORTHO05D006489 7.0e-114 414.8 413 52.8
VMungo0331G1542 Vigna mungo HOM05D005330 ORTHO05D006489 4.6e-113 412.1 393 55.2
Nn6g34611 Nelumbo nucifera HOM05D005330 ORTHO05D006489 7.8e-113 411.4 389 55.8
Psat0s741g0240 Pisum sativum HOM05D005330 ORTHO05D006489 2.3e-112 409.8 390 54.9
Ciclev10025803m.g Citrus clementina HOM05D005330 ORTHO05D006489 3.0e-112 409.5 390 54.4
Lsat_1_v5_gn_5_136241 Lactuca sativa HOM05D005330 ORTHO05D006489 3.0e-112 409.5 391 53.2
Sed0026793 Sechium edule HOM05D005330 ORTHO05D006489 5.1e-112 408.7 411 53.0
Glyma.16G008300 Glycine max HOM05D005330 ORTHO05D006489 6.6e-112 408.3 392 53.8
TWI31G1192 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 1.5e-111 407.1 389 53.7
Medtr8g020850 Medicago truncatula HOM05D005330 ORTHO05D006489 1.9e-111 406.8 389 58.1
Hma1.2p1_0686F.1_g203410 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 2.5e-111 406.4 392 56.1
Prupe.3G040200 Prunus persica HOM05D005330 ORTHO05D006489 2.8e-110 402.9 394 53.3
HanXRQChr12g0360301 Helianthus annuus HOM05D005330 ORTHO05D006489 1.8e-109 400.2 391 56.0
HanXRQChr12g0360351 Helianthus annuus HOM05D005330 ORTHO05D006489 1.8e-109 400.2 391 56.0
Atru.chr1.3994 Acer truncatum HOM05D005330 ORTHO05D006489 2.3e-109 399.8 399 51.6
Actinidia32189 Actinidia chinensis HOM05D005330 ORTHO05D006489 2.3e-109 399.8 391 54.5
Nitab4.5_0000189g0150 Nicotiana tabacum HOM05D005330 ORTHO05D006489 3.1e-109 399.4 379 53.6
Nitab4.5_0001199g0030 Nicotiana tabacum HOM05D005330 ORTHO05D006489 2.0e-108 396.7 379 53.3
Hund05737 Selenicereus undatus HOM05D005330 ORTHO05D006489 7.5e-108 394.8 398 55.8
Ca_23387_v3 Cicer arietinum L. HOM05D005330 ORTHO05D006489 9.9e-108 394.4 389 55.5
Sopen12g023810 Solanum pennellii HOM05D005330 ORTHO05D006489 1.7e-107 393.7 392 49.7
Oeu015485.2 Olea europaea HOM05D005330 ORTHO05D006489 6.4e-107 391.7 397 51.9
PGSC0003DMG400014100 Solanum tuberosum HOM05D005330 ORTHO05D006489 8.3e-107 391.3 373 52.5
Solyc12g049330.2 Solanum lycopersicum HOM05D005330 ORTHO05D006489 1.1e-106 391.0 392 49.2
EL10Ac7g16412 Beta vulgaris HOM05D005330 ORTHO05D006489 1.4e-106 390.6 397 51.6
Potri.001G168700 Populus trichocarpa HOM05D005330 ORTHO05D006489 3.2e-106 389.4 390 51.5
Atru.chr1.3993 Acer truncatum HOM05D005330 ORTHO05D006489 2.1e-105 386.7 396 53.5
Hund18689 Selenicereus undatus HOM05D005330 ORTHO05D006489 7.8e-105 384.8 387 52.2
MD09G1182600 Malus domestica HOM05D005330 ORTHO05D006489 1.7e-104 383.6 388 50.3
Ah.08g216810 Amaranthus hybridus HOM05D005330 ORTHO05D006489 1.1e-103 380.9 406 50.7
Rhsim08G0239400 Rhododendron simsii HOM05D005330 ORTHO05D006489 4.7e-102 375.6 391 50.9
Lj5A36G79 Lonicera japonica HOM05D005330 ORTHO05D006489 6.8e-101 371.7 411 54.5
MD09G1182700 Malus domestica HOM05D005330 ORTHO05D006489 1.5e-100 370.5 393 50.9
SalBow6G0719 Salvia bowleyana HOM05D005330 ORTHO05D006489 8.4e-99 364.8 401 47.4
SalBow6G0331 Salvia bowleyana HOM05D005330 ORTHO05D006489 1.4e-98 364.0 401 47.1
AUR62009886 Chenopodium quinoa HOM05D005330 ORTHO05D006489 9.2e-98 361.3 388 50.0
Duzib160G0528 Durio zibethinus HOM05D005330 ORTHO05D006489 2.1e-97 360.1 392 49.5
MD09G1182800 Malus domestica HOM05D005330 ORTHO05D006489 3.5e-97 359.4 391 48.8
Hma1.2p1_0291F.1_g115070 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 9.6e-95 351.3 388 48.5
Glyma.03G080300 Glycine max HOM05D005330 ORTHO05D006489 1.2e-94 350.9 396 52.8
ECA234G4612 Erigeron canadensis HOM05D005330 ORTHO05D006489 4.7e-94 349.0 382 46.1
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.4e-93 346.7 302 57.0
arahy.Tifrunner.gnm1.ann1.K577WU Arachis hypogaea HOM05D005330 ORTHO05D006489 2.0e-92 343.6 298 59.4
arahy.Tifrunner.gnm1.ann1.RX87J0 Arachis hypogaea HOM05D005330 ORTHO05D006489 3.4e-92 342.8 298 59.4
ATR0598G333 Amborella trichopoda HOM05D005330 ORTHO05D006489 5.8e-92 342.0 384 48.7
Migut.I01076 Erythranthe guttata HOM05D005330 ORTHO05D006489 1.3e-91 340.9 402 48.8
AUR62001479 Chenopodium quinoa HOM05D005330 ORTHO05D006489 2.2e-91 340.1 400 47.2
COL.COLO4_30752 Corchorus olitorius HOM05D005330 ORTHO05D006489 3.8e-91 339.3 392 50.8
SGA_v2.0_scaffold122G33335 Striga asiatica HOM05D005330 ORTHO05D006489 8.4e-91 338.2 398 45.5
MELO3C024354.2 Cucumis melo HOM05D005330 ORTHO05D006489 2.1e-89 333.6 298 57.7
HanXRQChr12g0360331 Helianthus annuus HOM05D005330 ORTHO05D006489 2.7e-89 333.2 391 50.9
RcHm_v2.0_Chr2g0145651 Rosa chinensis HOM05D005330 ORTHO05D006489 6.0e-89 332.0 397 45.1
HPP92_013292 Vanilla planifolia HOM05D005330 ORTHO05D006489 7.8e-89 331.6 395 46.3
Aqoxy2G00145 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 3.0e-88 329.7 415 42.9
DCAR_016124 Daucus carota HOM05D005330 ORTHO05D006489 3.0e-88 329.7 387 50.6
CsaV3_7G034470 Cucumis sativus L. HOM05D005330 ORTHO05D006489 3.9e-88 329.3 296 57.4
PSO135G0621 Papaver somniferum HOM05D005330 ORTHO05D006489 1.5e-87 327.4 391 48.1
SEGI_21309 Sequoiadendron giganteum HOM05D005330 ORTHO05D006489 7.3e-87 325.1 387 45.0
Peaxi162Scf00177g00417 Petunia axillaris HOM05D005330 ORTHO05D006489 9.6e-87 324.7 372 50.0
PSO724G1321 Papaver somniferum HOM05D005330 ORTHO05D006489 4.0e-85 319.3 400 46.2
SGA_v2.0_scaffold71G23853 Striga asiatica HOM05D005330 ORTHO05D006489 5.8e-84 315.5 434 41.5
FvH4_6g34790 Fragaria vesca HOM05D005330 ORTHO05D006489 1.3e-83 314.3 397 46.6
FAN05G5341 Fragaria x ananassa HOM05D005330 ORTHO05D006489 1.4e-82 310.8 397 46.1
CDE05G1829 Ceratophyllum demersum HOM05D005330 ORTHO05D006489 7.9e-81 305.1 304 50.3
MD02G1089500 Malus domestica HOM05D005330 ORTHO05D006489 6.7e-80 302.0 403 43.7
CAN.G1455.4 Capsicum annuum HOM05D005330 ORTHO05D006489 1.1e-79 301.2 265 54.0
TAR624G1001 Trochodendron aralioides HOM05D005330 ORTHO05D006489 3.4e-76 289.7 239 66.5
Os03g0177300 Oryza sativa ssp. japonica HOM05D005330 ORTHO05D006489 1.1e-71 274.6 389 39.3
Mapoly0002s0144 Marchantia polymorpha HOM05D005330 ORTHO05D006489 4.9e-67 259.2 425 38.4
TAR624G0147 Trochodendron aralioides HOM05D005330 ORTHO05D006489 1.2e-65 254.6 235 61.7
SMO118G0169 Selaginella moellendorffii HOM05D005330 ORTHO05D006489 4.6e-65 252.7 398 37.2
PSO135G0922 Papaver somniferum HOM05D005330 ORTHO05D006489 9.7e-63 245.0 382 38.2
Pp3c13_6970 Physcomitrium patens HOM05D005330 ORTHO05D006489 8.2e-62 241.9 491 35.2
AagrBONN_evm.TU.Sc2ySwM_228.1646 Anthoceros agrestis HOM05D005330 ORTHO05D006489 1.7e-59 234.2 404 37.4
CAN.G1080.1 Capsicum annuum HOM05D005330 ORTHO05D006489 6.1e-57 225.7 265 43.8
Zm00001eb401910 Zea mays HOM05D005330 ORTHO05D006489 2.5e-55 220.3 232 48.3
PSO135G0120 Papaver somniferum HOM05D005330 ORTHO05D006489 2.2e-51 207.2 387 35.4
Pp3c16_12380 Physcomitrium patens HOM05D005330 ORTHO05D006489 2.7e-49 200.3 431 32.9
PSO724G1224 Papaver somniferum HOM05D005330 ORTHO05D006489 6.5e-43 179.1 192 45.3
Aqoxy3G00178 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 3.9e-40 169.9 223 40.4
Actinidia21790 Actinidia chinensis HOM05D005330 ORTHO05D006489 9.1e-37 158.7 138 63.0
CBR_g17139 Chara braunii HOM05D005330 ORTHO05D006489 1.3e-35 154.8 330 32.1
CSS0046024 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 2.2e-35 154.1 109 65.1
CSS0027574 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 1.6e-33 147.9 147 55.1
Lsat_1_v5_gn_5_136301 Lactuca sativa HOM05D005330 ORTHO05D006489 3.4e-31 140.2 251 35.9
Aqoxy3G00203 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 1.3e-30 138.3 285 34.4
Dinv20433 Davidia involucrata HOM05D005330 ORTHO05D006489 2.0e-28 131.0 234 39.3
Actinidia21791 Actinidia chinensis HOM05D005330 ORTHO05D006489 2.7e-28 130.6 207 37.7
CSS0036813 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 5.9e-20 102.8 129 45.7
Eucgr.I00478 Eucalyptus grandis HOM05D005330 ORTHO05D006489 2.0e-15 87.8 115 40.0
Oeu020346.1 Olea europaea HOM05D005330 ORTHO05D006489 2.2e-14 84.3 125 40.0
Oeu020347.1 Olea europaea HOM05D005330 ORTHO05D006489 1.2e-12 78.6 91 57.1
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.4e-08 65.1 173 24.3
Pp3c8_18050 Physcomitrium patens HOM05D001948 ORTHO05D001873 6.8e-08 62.8 66 42.4
RhsimUnG0257000 Rhododendron simsii HOM05D002922 ORTHO05D000401 8.9e-08 62.4 54 61.1
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.6e-07 60.8 183 21.9
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.6e-07 60.8 183 21.9
AagrBONN_evm.TU.Sc2ySwM_344.4886 Anthoceros agrestis HOM05D001948 ORTHO05D001873 5.8e-07 59.7 66 36.4
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 7.5e-07 59.3 183 21.9
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 9.8e-07 58.9 185 23.8
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 2.2e-06 57.8 185 22.2
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.2e-06 57.8 185 22.2
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 2.2e-06 57.8 183 21.9
Aqoxy3G02542 Aquilegia oxysepala HOM05D055259 ORTHO05D006489 2.9e-06 57.4 211 28.9
BcaC06g32904 Brassica carinata HOM05D001948 ORTHO05D001873 2.9e-06 57.4 62 45.2
BcaC06g32905 Brassica carinata HOM05D001948 ORTHO05D001873 2.9e-06 57.4 62 45.2
Carub.0007s1687 Capsella rubella HOM05D001948 ORTHO05D001873 2.9e-06 57.4 58 43.1
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 2.9e-06 57.4 181 22.7
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 6.4e-06 56.2 186 22.6


User provided reference genes

Program Settings