Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 9.7e-68 260.0 129 100.0
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 6.7e-45 184.1 98 90.8
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 7.5e-44 180.6 98 89.8
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 7.5e-44 180.6 98 89.8
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.6e-41 172.9 100 85.0
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 5.9e-41 171.0 98 82.7
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 5.9e-41 171.0 98 82.7
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 7.7e-41 170.6 98 83.7
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 1.0e-40 170.2 98 80.6
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 1.3e-40 169.9 98 81.6
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 2.9e-40 168.7 98 81.6
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 3.8e-40 168.3 98 82.7
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 5.0e-40 167.9 98 80.6
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 5.0e-40 167.9 98 80.6
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 6.5e-40 167.5 98 79.6
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 6.5e-40 167.5 98 81.6
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 8.5e-40 167.2 98 80.6
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 8.5e-40 167.2 98 80.6
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 8.5e-40 167.2 98 81.6
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 1.1e-39 166.8 98 80.6
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 1.1e-39 166.8 98 81.6
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.5e-39 166.4 98 80.6
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 1.5e-39 166.4 98 79.6
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 1.5e-39 166.4 98 80.6
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 1.9e-39 166.0 98 78.6
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 2.5e-39 165.6 98 79.6
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 3.2e-39 165.2 98 78.6
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 4.2e-39 164.9 98 78.6
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 5.5e-39 164.5 98 78.6
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 5.5e-39 164.5 98 77.6
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 5.5e-39 164.5 98 78.6
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 5.5e-39 164.5 98 79.6
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 5.5e-39 164.5 98 81.6
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 9.4e-39 163.7 98 80.6
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 9.4e-39 163.7 98 78.6
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 1.2e-38 163.3 98 79.6
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 1.2e-38 163.3 98 76.5
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 1.2e-38 163.3 98 78.6
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 1.6e-38 162.9 98 77.6
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 1.6e-38 162.9 106 73.6
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 1.6e-38 162.9 98 78.6
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 1.6e-38 162.9 98 78.6
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 2.1e-38 162.5 98 79.6
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 2.1e-38 162.5 98 80.6
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 2.1e-38 162.5 98 80.6
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 2.1e-38 162.5 98 77.6
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 2.1e-38 162.5 98 79.6
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 2.1e-38 162.5 98 78.6
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 2.7e-38 162.2 98 80.6
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 3.6e-38 161.8 98 76.5
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 3.6e-38 161.8 98 78.6
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 3.6e-38 161.8 98 77.6
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 4.7e-38 161.4 98 78.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 4.7e-38 161.4 98 75.5
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 6.1e-38 161.0 98 77.6
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 6.1e-38 161.0 98 77.6
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 1.0e-37 160.2 98 76.5
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 1.0e-37 160.2 98 76.5
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 1.0e-37 160.2 98 76.5
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 1.4e-37 159.8 100 74.0
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 1.8e-37 159.5 98 75.5
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 1.8e-37 159.5 98 76.5
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 2.3e-37 159.1 98 72.4
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 2.3e-37 159.1 98 75.5
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 2.3e-37 159.1 98 77.6
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 2.3e-37 159.1 98 74.5
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 2.3e-37 159.1 98 76.5
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 3.0e-37 158.7 98 74.5
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 3.0e-37 158.7 98 76.5
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 5.2e-37 157.9 98 73.5
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 5.2e-37 157.9 98 74.5
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 5.2e-37 157.9 98 74.5
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 5.2e-37 157.9 98 73.5
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 6.8e-37 157.5 98 75.5
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 6.8e-37 157.5 98 75.5
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 8.8e-37 157.1 98 76.5
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 8.8e-37 157.1 98 75.5
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 8.8e-37 157.1 98 73.5
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 1.2e-36 156.8 99 76.8
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 1.5e-36 156.4 98 73.5
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 2.6e-36 155.6 98 72.4
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 2.6e-36 155.6 98 72.4
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 2.6e-36 155.6 98 74.5
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 2.6e-36 155.6 98 74.5
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 2.6e-36 155.6 98 75.5
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 3.4e-36 155.2 98 72.4
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 3.4e-36 155.2 98 75.5
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 4.4e-36 154.8 98 72.4
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 4.4e-36 154.8 98 73.5
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 4.4e-36 154.8 98 74.5
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 4.4e-36 154.8 98 76.5
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 7.5e-36 154.1 98 73.5
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 9.8e-36 153.7 98 71.4
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 9.8e-36 153.7 98 71.4
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 9.8e-36 153.7 98 71.4
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 9.8e-36 153.7 98 74.5
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 9.8e-36 153.7 98 74.5
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 1.3e-35 153.3 98 71.4
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 1.3e-35 153.3 98 71.4
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 1.3e-35 153.3 98 73.5
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 1.3e-35 153.3 98 73.5
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 1.3e-35 153.3 98 73.5
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 1.3e-35 153.3 98 72.4
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 1.7e-35 152.9 98 74.5
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 1.7e-35 152.9 98 72.4
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 2.2e-35 152.5 98 74.5
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 2.2e-35 152.5 98 72.4
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 2.2e-35 152.5 98 73.5
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 2.2e-35 152.5 98 72.4
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 2.8e-35 152.1 97 73.2
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 3.7e-35 151.8 98 71.4
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 1.1e-34 150.2 98 71.4
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 1.8e-34 149.4 98 70.4
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 2.4e-34 149.1 98 72.4
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 4.1e-34 148.3 98 71.4
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 7.0e-34 147.5 98 71.4
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 1.2e-33 146.7 98 72.4
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 1.6e-33 146.4 136 56.6
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 1.7e-32 142.9 99 69.7
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 3.8e-32 141.7 99 69.7
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 2.5e-31 139.0 98 65.3
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 3.2e-31 138.7 99 69.7
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 1.4e-29 133.3 98 66.3
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 5.2e-29 131.3 98 65.3
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 8.8e-29 130.6 102 65.7
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 8.8e-29 130.6 100 62.0
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.0e-28 129.4 98 64.3
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 3.4e-28 128.6 98 65.3
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.2e-27 125.9 98 67.3
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 1.3e-24 116.7 98 59.2
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 6.6e-24 114.4 67 85.1
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.2e-22 110.2 101 52.5
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.4e-18 96.7 98 54.1
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 1.9e-15 86.3 102 50.0
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 1.6e-14 83.2 98 43.9
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.7e-14 81.6 53 79.2
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 6.2e-14 81.3 45 88.9
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 5.8e-12 74.7 46 73.9
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.7e-11 73.2 99 41.4
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 5.4e-10 68.2 106 37.7
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 5.6e-07 58.2 51 45.1
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 9.5e-07 57.4 68 41.2


User provided reference genes

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