Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 3.7e-48 194.5 95 100.0
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 4.1e-47 191.0 95 97.9
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 4.5e-46 187.6 95 95.8
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 4.5e-46 187.6 95 95.8
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 5.9e-46 187.2 95 95.8
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 5.9e-46 187.2 95 95.8
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 5.9e-46 187.2 95 95.8
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 7.7e-46 186.8 95 95.8
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.7e-45 185.7 95 94.7
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 2.9e-45 184.9 95 94.7
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 5.0e-45 184.1 95 94.7
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 6.5e-45 183.7 95 93.7
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 6.5e-45 183.7 95 91.6
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 6.5e-45 183.7 95 91.6
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 8.5e-45 183.3 95 92.6
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 1.1e-44 183.0 95 93.7
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.4e-44 182.6 95 91.6
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.9e-44 182.2 95 90.5
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 2.5e-44 181.8 95 90.5
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 3.2e-44 181.4 95 91.6
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 3.2e-44 181.4 95 91.6
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 4.2e-44 181.0 95 90.5
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 7.2e-44 180.3 95 91.6
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 7.2e-44 180.3 95 90.5
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 7.2e-44 180.3 95 90.5
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 7.2e-44 180.3 95 91.6
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 7.2e-44 180.3 94 90.4
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 7.2e-44 180.3 94 90.4
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 9.4e-44 179.9 91 91.2
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 9.4e-44 179.9 93 91.4
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 9.4e-44 179.9 95 91.6
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.2e-43 179.5 92 93.5
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 1.2e-43 179.5 95 89.5
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.7e-43 178.3 93 91.4
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 3.6e-43 177.9 95 89.5
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.6e-43 177.6 94 90.4
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 6.1e-43 177.2 95 89.5
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.0e-42 176.4 92 91.3
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 1.0e-42 176.4 92 91.3
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.4e-42 176.0 95 89.5
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.4e-42 176.0 94 92.6
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.3e-42 175.3 96 89.6
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.0e-42 174.9 95 88.4
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 3.0e-42 174.9 94 88.3
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 3.9e-42 174.5 93 88.2
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 6.7e-42 173.7 95 88.4
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 8.8e-42 173.3 95 89.5
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.1e-41 172.9 95 85.3
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.5e-41 172.6 87 94.3
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.5e-41 172.6 87 94.3
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 2.0e-41 172.2 95 90.5
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 2.0e-41 172.2 93 89.2
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.6e-41 171.8 93 89.2
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 3.3e-41 171.4 95 88.4
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 4.4e-41 171.0 95 89.5
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 4.4e-41 171.0 95 85.3
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 5.7e-41 170.6 87 93.1
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 7.4e-41 170.2 95 86.3
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 7.4e-41 170.2 95 86.3
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 9.7e-41 169.9 95 87.4
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.7e-40 169.1 95 87.4
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.7e-40 169.1 95 87.4
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 2.8e-40 168.3 95 84.2
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 2.8e-40 168.3 84 95.2
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 4.8e-40 167.5 92 87.0
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 4.8e-40 167.5 94 84.0
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 8.2e-40 166.8 93 86.0
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.1e-39 166.4 83 94.0
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 1.4e-39 166.0 93 84.9
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.8e-39 165.6 94 84.0
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.8e-39 165.6 95 86.3
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.8e-39 165.6 95 86.3
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 2.4e-39 165.2 95 86.3
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 3.1e-39 164.9 86 94.2
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 3.4e-38 161.4 95 82.1
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.4e-38 161.4 120 70.0
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 7.7e-38 160.2 95 77.9
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.9e-37 158.3 101 80.2
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 3.8e-37 157.9 95 78.9
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.8e-37 157.9 93 84.9
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 6.5e-37 157.1 94 78.7
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 8.5e-37 156.8 94 79.8
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 8.5e-37 156.8 94 79.8
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.1e-36 156.4 103 76.7
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 1.1e-36 156.4 94 79.8
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.4e-36 156.0 93 83.9
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.4e-36 156.0 93 83.9
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 2.5e-36 155.2 84 89.3
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 5.5e-36 154.1 95 78.9
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 7.2e-36 153.7 84 89.3
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 7.2e-36 153.7 84 89.3
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 7.2e-36 153.7 84 89.3
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.6e-35 152.5 89 79.8
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.1e-35 152.1 96 75.0
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 6.1e-35 150.6 85 82.4
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 8.8e-34 146.7 86 76.7
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 8.8e-34 146.7 94 75.5
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 8.8e-34 146.7 79 94.9
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 6.3e-32 140.6 78 91.0
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 8.2e-32 140.2 74 93.2
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.4e-31 139.4 84 82.1
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 9.1e-31 136.7 81 79.0
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 2.6e-30 135.2 74 89.2
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.3e-29 132.9 64 95.3
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 1.7e-29 132.5 74 83.8
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 1.7e-29 132.5 71 90.1
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.5e-28 129.4 83 77.1
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 9.4e-28 126.7 97 69.1
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 9.4e-28 126.7 74 87.8
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.6e-27 125.9 74 82.4
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 2.3e-26 122.1 71 80.3
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 8.8e-26 120.2 67 80.6
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 8.8e-26 120.2 95 66.3
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 8.8e-26 120.2 74 81.1
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.0e-25 119.0 95 68.4
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 2.0e-25 119.0 95 68.4
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 2.6e-25 118.6 74 77.0
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 5.7e-25 117.5 73 75.3
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 6.5e-21 104.0 86 57.0
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 7.2e-20 100.5 54 92.6
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 9.4e-20 100.1 85 54.1
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.2e-19 99.8 90 58.9
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 8.8e-18 93.6 60 80.0
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 3.4e-17 91.7 45 91.1
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 5.7e-17 90.9 56 75.0
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 2.0e-14 82.4 85 48.2
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 2.0e-14 82.4 48 81.2
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.7e-13 79.3 78 59.0
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 6.3e-08 60.8 36 77.8
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.8e-07 59.3 99 39.4
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.4e-07 58.9 99 39.4


User provided reference genes

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