Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1956 Trochodendron aralioides HOM05D003658 ORTHO05D415344 6.7e-66 253.8 124 100.0
Cfa011369 Carpinus fangiana HOM05D003658 ORTHO05D004457 9.8e-09 63.9 48 66.7
DCAR_016522 Daucus carota HOM05D003658 ORTHO05D004457 9.8e-09 63.9 41 75.6
Nn2g10669 Nelumbo nucifera HOM05D003658 ORTHO05D004457 9.8e-09 63.9 39 82.1
Aqoxy7G00983 Aquilegia oxysepala HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
CARHR029540 Cardamine hirsuta HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
CDE02G3705 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Duzib213G0488 Durio zibethinus HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Migut.N03234 Erythranthe guttata HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Gohir.A01G060300 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Gohir.D01G046800 Gossypium hirsutum HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Gorai.002G066300 Gossypium raimondii HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Lalb_Chr14g0374811 Lupinus albus HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
MBI17_g19523_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
MBI17_g43655_MAGBIO Magnolia biondii HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Nn2g13001 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Nn3g19734 Nelumbo nucifera HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Pp3c1_18250 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
TWI75G0848 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
TAR369G0890 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
TAR623G0185 Trochodendron aralioides HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
unitig_8.g4304 Utricularia gibba HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Zm00001eb160030 Zea mays HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Zm00001eb356970 Zea mays HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Zm00001eb440860 Zea mays HOM05D003658 ORTHO05D004457 1.3e-08 63.5 39 79.5
Atru.chr3.3712 Acer truncatum HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Actinidia03749 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Actinidia07110 Actinidia chinensis HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Aa31LG4G17270 Aethionema arabicum HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
ATR0561G124 Amborella trichopoda HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 76.9
arahy.Tifrunner.gnm1.ann1.HT4L1Y Arachis hypogaea HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
arahy.Tifrunner.gnm1.ann1.Z66RMF Arachis hypogaea HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
MSTRG.22380 Avicennia marina HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
MSTRG.24196 Avicennia marina HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
CSS0000103 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
CSS0002392 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
CAN.G1001.10 Capsicum annuum HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Cfa011371 Carpinus fangiana HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
CDE08G0949 Ceratophyllum demersum HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 76.9
Ca_01436_v3 Cicer arietinum L. HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Ciclev10027703m.g Citrus clementina HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Cc10_g16400 Coffea canephora HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
COL.COLO4_32786 Corchorus olitorius HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Haze_23933 Corylus avellana HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
MELO3C013218.2 Cucumis melo HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Duzib170G0243 Durio zibethinus HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Eucgr.F04457 Eucalyptus grandis HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
FvH4_1g25660 Fragaria vesca HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Glyma.13G328600 Glycine max HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Glyma.15G045100 Glycine max HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Lj4A607T48 Lonicera japonica HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Lj3g0017853 Lotus japonicus HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Lalb_Chr24g0394441 Lupinus albus HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 76.9
MD03G1111400 Malus domestica HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
MD11G1125100 Malus domestica HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Manes.04G025400 Manihot esculenta HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 76.9
Medtr2g093280 Medicago truncatula HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Nitab4.5_0000106g0020 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Oeu046772.1 Olea europaea HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Phvul.005G137400 Phaseolus vulgaris HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Potri.010G023100 Populus trichocarpa HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Prupe.6G093800 Prunus persica HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
PGR031G3879 Punica granatum HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
QL01p036935 Quercus lobata HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
RcHm_v2.0_Chr7g0219181 Rosa chinensis HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Sed0011385 Sechium edule HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Sed0019661 Sechium edule HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Hund30148 Selenicereus undatus HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Hund30149 Selenicereus undatus HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Sc12g0008310 Simmondsia chinensis HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Solyc06g075340.4 Solanum lycopersicum HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Sopen06g031760 Solanum pennellii HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
PGSC0003DMG400007504 Solanum tuberosum HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
SGA_v2.0_scaffold19G08651 Striga asiatica HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
THA.LOC104800615 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
THA.LOC104826356 Tarenaya hassleriana HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
Thecc.07G099900 Theobroma cacao HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
TPR.G11612 Trifolium pratense HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
TWI31G0613 Tripterygium wilfordii HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
HPP92_005503 Vanilla planifolia HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 76.9
VMungo1080G1458 Vigna mungo HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
GSVIVG01025125001 Vitis vinifera HOM05D003658 ORTHO05D004457 1.7e-08 63.2 39 79.5
arahy.Tifrunner.gnm1.ann1.1XIG7Z Arachis hypogaea HOM05D003658 ORTHO05D004457 2.2e-08 62.8 39 76.9
arahy.Tifrunner.gnm1.ann1.SY27G3 Arachis hypogaea HOM05D003658 ORTHO05D004457 2.2e-08 62.8 39 76.9
CiPaw.13G106400 Carya illinoinensis HOM05D003658 ORTHO05D004457 2.2e-08 62.8 39 76.9
CsaV3_7G021350 Cucumis sativus L. HOM05D003658 ORTHO05D004457 2.2e-08 62.8 39 76.9
AL1G43750 Arabidopsis lyrata HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
AT1G29900 Arabidopsis thaliana HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
BcaB07g32573 Brassica carinata HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
BcaC05g27003 Brassica carinata HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
A09p36600 Brassica napus HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
C05p28660 Brassica napus HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
BolC5t31587H Brassica oleracea HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
BraA09t39180Z Brassica rapa HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
Carub.0001s2812 Capsella rubella HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
ClCG09G021680 Citrullus lanatus HOM05D003658 ORTHO05D004457 2.8e-08 62.4 47 66.0
DCAR_026092 Daucus carota HOM05D003658 ORTHO05D004457 2.8e-08 62.4 47 66.0
Thhalv10006598m.g Eutrema salsugineum HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
FAN26G3193 Fragaria x ananassa HOM05D003658 ORTHO05D004457 2.8e-08 62.4 47 66.0
FAN28G2851 Fragaria x ananassa HOM05D003658 ORTHO05D004457 2.8e-08 62.4 47 66.0
Lalb_Chr22g0350161 Lupinus albus HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
Mapoly0126s0034 Marchantia polymorpha HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
PSO782G2702 Papaver somniferum HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
Sabra10G0015500 Salix brachista HOM05D003658 ORTHO05D004457 2.8e-08 62.4 47 66.0
Sp1g25780 Schrenkiella parvula HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
SMO116G0226 Selaginella moellendorffii HOM05D003658 ORTHO05D004457 2.8e-08 62.4 39 76.9
AagrBONN_evm.TU.Sc2ySwM_228.578 Anthoceros agrestis HOM05D003658 ORTHO05D004457 3.7e-08 62.0 39 76.9
EL10Ac1g00972 Beta vulgaris HOM05D003658 ORTHO05D004457 3.7e-08 62.0 39 76.9
CANSAT35G1266 Cannabis sativa HOM05D003658 ORTHO05D004457 3.7e-08 62.0 39 76.9
AUR62004284 Chenopodium quinoa HOM05D003658 ORTHO05D004457 3.7e-08 62.0 39 76.9
AUR62033373 Chenopodium quinoa HOM05D003658 ORTHO05D004457 3.7e-08 62.0 39 76.9
RcHm_v2.0_Chr2g0124141 Rosa chinensis HOM05D003658 ORTHO05D004457 3.7e-08 62.0 39 76.9
arahy.Tifrunner.gnm1.ann1.F0P9EH Arachis hypogaea HOM05D003658 ORTHO05D004457 4.9e-08 61.6 39 76.9
Psat5g277200 Pisum sativum HOM05D003658 ORTHO05D004457 4.9e-08 61.6 39 76.9
CSS0031195 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 6.3e-08 61.2 39 76.9
CSS0048503 Camellia sinensis var. sinensis HOM05D003658 ORTHO05D004457 6.3e-08 61.2 39 76.9
Nitab4.5_0010336g0040 Nicotiana tabacum HOM05D003658 ORTHO05D004457 6.3e-08 61.2 61 55.7
vmacro14471 Vaccinium macrocarpon HOM05D003658 ORTHO05D004457 6.3e-08 61.2 39 76.9
ECA234G0865 Erigeron canadensis HOM05D003658 ORTHO05D004457 8.3e-08 60.8 39 76.9
HanXRQChr09g0251621 Helianthus annuus HOM05D003658 ORTHO05D004457 8.3e-08 60.8 39 76.9
HanXRQChr15g0493841 Helianthus annuus HOM05D003658 ORTHO05D004457 8.3e-08 60.8 39 76.9
Pp3c2_19430 Physcomitrium patens HOM05D003658 ORTHO05D004457 8.3e-08 60.8 39 74.4
Ah.05g175890 Amaranthus hybridus HOM05D003658 ORTHO05D004457 1.1e-07 60.5 39 74.4
PRCOL_00001523 Prasinoderma coloniale HOM05D003658 ORTHO05D004457 1.4e-07 60.1 39 74.4
SHI06033 Sapria himalayana HOM05D003658 ORTHO05D004457 1.4e-07 60.1 47 61.7
CBR_g16075 Chara braunii HOM05D003658 ORTHO05D004457 1.8e-07 59.7 39 74.4
Nitab4.5_0000816g0110 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.8e-07 59.7 61 54.1
Nitab4.5_0010960g0010 Nicotiana tabacum HOM05D003658 ORTHO05D004457 1.8e-07 59.7 61 54.1
Oeu047812.2 Olea europaea HOM05D003658 ORTHO05D004457 1.8e-07 59.7 39 76.9
Peaxi162Scf00072g00510 Petunia axillaris HOM05D003658 ORTHO05D004457 3.1e-07 58.9 34 82.4
Cre08.g358580 Chlamydomonas reinhardtii HOM05D003658 ORTHO05D004457 7.0e-07 57.8 39 71.8
Lsat_1_v5_gn_9_7920 Lactuca sativa HOM05D003658 ORTHO05D004457 9.2e-07 57.4 61 52.5
Rhsim01G0220800 Rhododendron simsii HOM05D003658 ORTHO05D004457 9.2e-07 57.4 36 77.8


User provided reference genes

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