Gene: AT1G29900

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G29900
  • Transcript Identifier AT1G29900.1
  • Gene Type Coding gene
  • Location Chr1 : 10468164-10471976 : positive

Gene Family Information

  • ID HOM05D003658
  • #Genes/#Species 187/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G29900.1
  • symbol CARB
  • Alias VEN3,VENOSA 3
  • uniprot Q42601

Descriptions

  • Description carbamoyl phosphate synthetase B
  • Computational description carbamoyl phosphate synthetase B (CARB); FUNCTIONS IN: catalytic activity, ATP binding; INVOLVED IN: cellular response to phosphate starvation, arginine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), MGS-like (InterPro:IPR011607), PreATP-grasp-like fold (InterPro:IPR016185), Carbamoyl phosphate synthetase, large subunit, oligomerisation (InterPro:IPR005480), Carbamoyl phosphate synthase, large subunit, glutamine-dependent (InterPro:IPR006275), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Carbamoyl phosphate synthase, large subunit (InterPro:IPR005483), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: acetyl-CoA carboxylase 2 (TAIR:AT1G36180.1); Has 49576 Blast hits to 29968 proteins in 5011 species: Archae - 665; Bacteria - 22536; Metazoa - 6475; Fungi - 1021; Plants - 476; Viruses - 0; Other Eukaryotes - 18403 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006807
IEA
GOA Databasenitrogen compound metabolic process
GO:0006807
IBA
Gene Ontologynitrogen compound metabolic process1
GO:0006807
IEA
InterPronitrogen compound metabolic process
GO:0008652
IEA
GOA Databasecellular amino acid biosynthetic process
GO:0006221
IEA
GOA Databasepyrimidine nucleotide biosynthetic process
GO:0006526
NAS, IEA
Gene Ontologyarginine biosynthetic process2
GO:0006541
IBA
Gene Ontologyglutamine metabolic process1
GO:0016036
IEP
Gene Ontologycellular response to phosphate starvation3
GO:0044205
IEA
Gene Ontology'de novo' UMP biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004088
IEA
GOA Databasecarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
GO:0004088
IDA
Gene Ontologycarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity4
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016874
IEA
GOA Databaseligase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast5
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma6
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005951
IDA
Gene Ontologycarbamoyl-phosphate synthase complex4
GO:0005829
RCA
Gene Ontologycytosol7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011607 Methylglyoxal synthase-like domain
IPR013815 ATP-grasp fold, subdomain 1
IPR016185 Pre-ATP-grasp domain superfamily
IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain
IPR036914 Methylglyoxal synthase-like domain superfamily
IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain
IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily
IPR006275 Carbamoyl-phosphate synthase, large subunit
IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain
Mapman id Description
4.1.1.1.2.1.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.carbamoyl phosphate synthetase heterodimer.large subunit
6.2.1.1.1 Nucleotide metabolism.pyrimidines.de novo biosynthesis.carbamoyl phosphate synthetase heterodimer.large subunit