Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0237 Trochodendron aralioides HOM05D003508 ORTHO05D004579 6.7e-44 180.3 89 100.0
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 1.3e-31 139.4 72 91.7
Nn8g38869 Nelumbo nucifera HOM05D003508 ORTHO05D004579 3.2e-30 134.8 80 78.8
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 7.2e-30 133.7 72 86.1
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 3.6e-29 131.3 72 86.1
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 3.6e-29 131.3 72 86.1
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 1.0e-28 129.8 72 83.3
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 2.3e-28 128.6 72 84.7
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 3.0e-28 128.3 72 84.7
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 3.0e-28 128.3 72 83.3
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 3.0e-28 128.3 72 81.9
Atru.chr12.1012 Acer truncatum HOM05D003508 ORTHO05D004579 4.0e-28 127.9 72 83.3
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 5.2e-28 127.5 70 84.3
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 5.2e-28 127.5 72 83.3
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 6.7e-28 127.1 72 79.2
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 6.7e-28 127.1 72 81.9
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 1.2e-27 126.3 70 82.9
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 1.2e-27 126.3 72 81.9
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 2.0e-27 125.6 72 80.6
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 2.6e-27 125.2 72 80.6
Dinv11847 Davidia involucrata HOM05D003508 ORTHO05D004579 3.3e-27 124.8 72 80.6
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 3.3e-27 124.8 71 83.1
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 4.4e-27 124.4 72 81.9
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 4.4e-27 124.4 68 86.8
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 4.4e-27 124.4 72 80.6
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 4.4e-27 124.4 72 81.9
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 4.4e-27 124.4 73 84.9
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 4.4e-27 124.4 73 84.9
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 4.4e-27 124.4 77 77.9
CiPaw.14G033200 Carya illinoinensis HOM05D003508 ORTHO05D004579 5.7e-27 124.0 72 79.2
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 5.7e-27 124.0 72 79.2
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 7.5e-27 123.6 68 83.8
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 9.7e-27 123.2 70 81.4
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 1.3e-26 122.9 72 84.7
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 1.3e-26 122.9 72 79.2
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 1.3e-26 122.9 72 81.9
PGSC0003DMG400011923 Solanum tuberosum HOM05D003508 ORTHO05D004579 1.3e-26 122.9 72 81.9
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 1.3e-26 122.9 72 79.2
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 1.7e-26 122.5 72 79.2
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 1.7e-26 122.5 76 77.6
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 1.7e-26 122.5 76 77.6
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 1.7e-26 122.5 69 81.2
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 2.8e-26 121.7 70 81.4
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 2.8e-26 121.7 72 79.2
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 2.8e-26 121.7 72 79.2
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 2.8e-26 121.7 70 80.0
Nn5g30614 Nelumbo nucifera HOM05D003508 ORTHO05D004579 2.8e-26 121.7 82 73.2
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 3.7e-26 121.3 72 77.8
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 3.7e-26 121.3 72 80.6
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 3.7e-26 121.3 72 80.6
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 3.7e-26 121.3 68 83.8
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 3.7e-26 121.3 69 84.1
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 4.8e-26 120.9 72 77.8
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 4.8e-26 120.9 72 80.6
CsaV3_7G016190 Cucumis sativus L. HOM05D003508 ORTHO05D004579 6.3e-26 120.6 68 82.4
Atru.chr5.1129 Acer truncatum HOM05D003508 ORTHO05D004579 8.3e-26 120.2 75 77.3
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 8.3e-26 120.2 72 79.2
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 8.3e-26 120.2 67 85.1
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 1.1e-25 119.8 72 77.8
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 1.4e-25 119.4 70 80.0
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 1.4e-25 119.4 71 80.3
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.8e-25 119.0 67 82.1
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 1.8e-25 119.0 69 82.6
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 2.4e-25 118.6 67 82.1
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 2.4e-25 118.6 65 84.6
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.4e-25 118.6 65 84.6
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.4e-25 118.6 65 84.6
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.4e-25 118.6 65 84.6
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.4e-25 118.6 65 84.6
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 2.4e-25 118.6 66 83.3
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 2.4e-25 118.6 72 80.6
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 2.4e-25 118.6 68 80.9
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 3.1e-25 118.2 72 80.6
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 3.1e-25 118.2 69 79.7
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 3.1e-25 118.2 68 79.4
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 3.1e-25 118.2 67 80.6
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 4.1e-25 117.9 67 80.6
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 4.1e-25 117.9 72 76.4
Haze_01395 Corylus avellana HOM05D003508 ORTHO05D004579 5.3e-25 117.5 72 73.6
Thhalv10016888m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 5.3e-25 117.5 67 82.1
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 5.3e-25 117.5 72 76.4
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 5.3e-25 117.5 67 83.6
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 7.0e-25 117.1 65 84.6
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 7.0e-25 117.1 65 84.6
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 9.1e-25 116.7 67 80.6
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 9.1e-25 116.7 67 80.6
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 9.1e-25 116.7 68 80.9
Sabra10G0186100 Salix brachista HOM05D003508 ORTHO05D004579 9.1e-25 116.7 69 78.3
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 1.2e-24 116.3 67 80.6
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 1.2e-24 116.3 67 80.6
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 1.2e-24 116.3 67 80.6
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 1.2e-24 116.3 68 77.9
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 1.2e-24 116.3 71 78.9
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 1.2e-24 116.3 72 79.2
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 1.2e-24 116.3 67 79.1
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 79.4
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 1.6e-24 115.9 68 77.9
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 1.6e-24 115.9 72 77.8
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 2.0e-24 115.5 67 79.1
CDE04G3073 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 2.0e-24 115.5 77 71.4
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 2.0e-24 115.5 67 79.1
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 2.0e-24 115.5 67 79.1
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 2.0e-24 115.5 67 80.6
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 2.0e-24 115.5 71 74.6
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 2.7e-24 115.2 68 76.5
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 2.7e-24 115.2 68 76.5
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 2.7e-24 115.2 67 79.1
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 2.7e-24 115.2 65 83.1
BcaNung06364 Brassica carinata HOM05D003508 ORTHO05D004579 3.5e-24 114.8 68 76.5
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 3.5e-24 114.8 68 76.5
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 3.5e-24 114.8 67 79.1
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 3.5e-24 114.8 68 76.5
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 3.5e-24 114.8 65 81.5
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 4.5e-24 114.4 67 79.1
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 5.9e-24 114.0 67 79.1
BcaNung06362 Brassica carinata HOM05D003508 ORTHO05D004579 5.9e-24 114.0 67 80.6
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 5.9e-24 114.0 71 77.5
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 5.9e-24 114.0 67 79.1
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 7.7e-24 113.6 68 75.0
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 7.7e-24 113.6 71 74.6
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 1.0e-23 113.2 72 77.8
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 1.0e-23 113.2 67 79.1
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 2.2e-23 112.1 66 80.3
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 3.8e-23 111.3 71 73.2
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 5.0e-23 110.9 72 75.0
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 5.0e-23 110.9 72 75.0
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 6.5e-23 110.5 68 73.5
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 8.5e-23 110.2 72 72.2
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 1.9e-22 109.0 68 75.0
SEGI_06330 Sequoiadendron giganteum HOM05D003508 ORTHO05D004579 2.5e-22 108.6 72 72.2
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 3.2e-22 108.2 65 73.8
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 3.2e-22 108.2 63 76.2
Os02g0107200 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 4.2e-22 107.8 71 71.8
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 4.2e-22 107.8 71 71.8
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 9.4e-22 106.7 70 70.0
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 2.7e-21 105.1 72 66.7
MBI16_g04457_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 2.3e-20 102.1 53 88.7
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 5.2e-20 100.9 70 65.7
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 2.8e-18 95.1 52 88.5
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 4.1e-17 91.3 64 70.3
SMO203G0120 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 9.1e-17 90.1 72 59.7
CBR_g26358 Chara braunii HOM05D003508 ORTHO05D004579 5.9e-16 87.4 62 67.7
Haze_26564 Corylus avellana HOM05D003508 ORTHO05D004579 1.1e-14 83.2 60 63.3
HanXRQChr02g0038371 Helianthus annuus HOM05D003508 ORTHO05D004579 2.3e-12 75.5 70 57.1
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 5.7e-11 70.9 58 65.5
HanXRQChr15g0478241 Helianthus annuus HOM05D003508 ORTHO05D004579 5.4e-09 64.3 59 57.6
Cfa022308 Carpinus fangiana HOM05D003508 ORTHO05D004579 1.9e-06 55.8 47 57.4


User provided reference genes

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