Gene: AT2G38700
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G38700
- Transcript Identifier AT2G38700.1
- Gene Type Coding gene
- Location Chr2 : 16180918-16183785 : negative
Gene Family Information
- ID HOM05D003508
- #Genes/#Species 194/97
- Phylogenetic origin
- ID ORTHO05D004579
- #Genes/#Species 176/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT2G38700.1
- symbol MVD1
- Alias ATMVD1
- uniprot O23722
Descriptions
- Description mevalonate diphosphate decarboxylase 1
- Computational description mevalonate diphosphate decarboxylase 1 (MVD1); CONTAINS InterPro DOMAIN/s: Diphosphomevalonate decarboxylase (InterPro:IPR005935), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: GHMP kinase family protein (TAIR:AT3G54250.1); Has 1516 Blast hits to 1513 proteins in 678 species: Archae - 56; Bacteria - 877; Metazoa - 121; Fungi - 149; Plants - 60; Viruses - 0; Other Eukaryotes - 253 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006694 | IEA | GOA Database | steroid biosynthetic process | |
| GO:0008299 | IEA | GOA Database | isoprenoid biosynthetic process | |
| GO:0008299 | IEA | InterPro | isoprenoid biosynthetic process | |
| GO:0019287 | IDA | GOA Database | isopentenyl diphosphate biosynthetic process, mevalonate pathway | |
| GO:0019287 | IBA TAS, IEA | Gene Ontology | isopentenyl diphosphate biosynthetic process, mevalonate pathway | 1 2 |
| GO:0019287 | IEA | InterPro | isopentenyl diphosphate biosynthetic process, mevalonate pathway | |
| GO:0016126 | IEA | GOA Database | sterol biosynthetic process | |
| GO:0008202 | IEA | GOA Database | steroid metabolic process | |
| GO:0006629 | IEA | GOA Database | lipid metabolic process | |
| GO:0008610 | IGI | Gene Ontology | lipid biosynthetic process | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016831 | IEA | GOA Database | carboxy-lyase activity | |
| GO:0016831 | IEA | InterPro | carboxy-lyase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004163 | IEA | GOA Database | diphosphomevalonate decarboxylase activity | |
| GO:0004163 | IDA, IGI IBA | Gene Ontology | diphosphomevalonate decarboxylase activity | 2 3 4 |
| GO:0004163 | IEA | InterPro | diphosphomevalonate decarboxylase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0016829 | IEA | GOA Database | lyase activity | |
| GO:0042803 | IPI | Gene Ontology | protein homodimerization activity | 3 |
| GO:0042802 | IPI | Gene Ontology | identical protein binding | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | IDA IEA | GOA Database | cytosol | |
| GO:0005829 | HDA IBA | Gene Ontology | cytosol | 2 5 |
| GO:0005829 | IEA | InterPro | cytosol | |
| GO:0005777 | IEA | GOA Database | peroxisome | |
| GO:0005777 | IDA | Gene Ontology | peroxisome | 6 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029765 | Diphosphomevalonate decarboxylase |
| IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup |
| IPR041431 | Mvd1, C-terminal |
| IPR006204 | GHMP kinase N-terminal domain |
| IPR036554 | GHMP kinase, C-terminal domain superfamily |
| IPR005935 | Diphosphomevalonate/phosphomevalonate decarboxylase |
| IPR020568 | Ribosomal protein S5 domain 2-type fold |
| Mapman id | Description |
|---|---|
| 9.1.1.6 | Secondary metabolism.terpenoids.mevalonate pathway.mevalonate diphosphate decarboxylase |