Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-187 659.8 331 100.0
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 9.2e-147 523.9 331 81.3
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 9.9e-141 503.8 332 74.7
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.4e-139 499.2 353 72.0
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 9.6e-136 487.3 330 73.0
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 1.6e-135 486.5 331 74.9
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 4.7e-135 485.0 333 73.6
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 2.4e-134 482.6 333 72.7
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 2.0e-133 479.6 331 71.0
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 4.4e-133 478.4 337 73.9
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 9.9e-133 477.2 339 73.7
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.3e-132 476.9 336 72.6
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 2.2e-132 476.1 331 71.6
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 8.4e-132 474.2 330 71.8
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 1.4e-131 473.4 331 70.4
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.9e-131 473.0 331 70.7
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 4.2e-131 471.9 333 70.9
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.2e-131 471.9 334 73.1
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 9.3e-131 470.7 333 70.3
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 9.3e-131 470.7 333 72.1
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.6e-130 469.9 332 70.2
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 2.7e-130 469.2 333 70.0
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.7e-129 466.5 338 73.4
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.7e-129 466.5 330 70.9
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.1e-128 463.8 331 71.0
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.5e-128 463.4 337 71.2
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.9e-128 463.0 331 71.3
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.5e-128 462.6 331 71.3
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 3.3e-128 462.2 331 68.6
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 3.6e-127 458.8 333 68.8
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 6.2e-127 458.0 333 69.4
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 4.0e-126 455.3 331 69.8
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.0e-126 455.3 332 70.5
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 6.9e-126 454.5 333 68.5
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 9.0e-126 454.1 333 68.8
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.5e-125 453.4 333 68.2
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.6e-125 452.6 332 69.0
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 3.4e-125 452.2 344 70.6
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 3.4e-125 452.2 333 69.4
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 4.4e-125 451.8 340 71.5
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 4.4e-125 451.8 334 68.3
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 7.6e-125 451.1 332 69.3
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 7.6e-125 451.1 331 68.9
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 9.9e-125 450.7 332 68.1
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 9.9e-125 450.7 334 67.4
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.2e-124 449.5 333 68.2
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 4.9e-124 448.4 333 67.6
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 4.9e-124 448.4 339 68.7
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 4.9e-124 448.4 339 68.7
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 8.4e-124 447.6 331 69.2
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.9e-123 446.4 323 70.0
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 4.2e-123 445.3 334 67.7
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.4e-123 444.9 333 67.3
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 9.3e-123 444.1 336 66.1
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 1.2e-122 443.7 334 67.4
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.1e-122 443.0 333 66.7
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 3.5e-122 442.2 333 67.0
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 6.0e-122 441.4 339 68.7
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 7.9e-122 441.0 331 68.0
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.0e-121 440.7 333 66.7
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 1.3e-121 440.3 334 66.5
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.3e-121 440.3 333 66.7
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.3e-121 439.5 334 66.5
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.3e-121 439.5 318 71.1
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 3.0e-121 439.1 377 61.3
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 6.6e-121 438.0 334 65.9
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.5e-120 436.8 333 66.1
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.5e-120 436.0 329 65.3
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 3.3e-120 435.6 334 65.6
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.3e-120 435.3 340 67.9
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 4.3e-120 435.3 338 68.6
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 4.3e-120 435.3 333 66.4
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 5.6e-120 434.9 334 65.3
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.3e-119 433.7 334 65.6
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.6e-119 433.3 336 68.2
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.1e-119 431.0 333 65.8
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.8e-118 429.9 335 65.7
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 2.4e-118 429.5 331 66.8
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.4e-118 429.5 324 66.7
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 3.1e-118 429.1 332 65.4
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 6.9e-118 427.9 336 67.3
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 1.2e-117 427.2 336 66.7
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 2.6e-117 426.0 328 66.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 3.4e-117 425.6 341 66.0
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.3e-116 423.7 331 64.7
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.3e-116 423.7 352 62.8
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.3e-116 423.7 336 66.7
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.2e-116 422.9 329 64.1
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 3.8e-116 422.2 332 64.8
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 6.4e-116 421.4 352 62.8
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 8.4e-116 421.0 337 65.6
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 8.4e-116 421.0 335 65.4
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 4.2e-115 418.7 336 66.1
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.6e-114 416.8 325 66.2
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.6e-114 416.8 325 66.2
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 3.3e-112 409.1 338 63.3
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 5.6e-112 408.3 347 64.8
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 1.6e-111 406.8 334 63.5
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.1e-110 404.1 329 62.3
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 4.0e-110 402.1 340 62.9
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 9.0e-110 401.0 339 64.9
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-109 400.6 354 59.3
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.2e-109 400.6 354 59.3
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.5e-109 400.2 342 64.3
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 1.9e-107 393.3 359 62.1
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 2.1e-106 389.8 334 61.4
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 6.0e-106 388.3 332 62.0
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.9e-104 383.3 355 61.1
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 5.7e-104 381.7 342 60.2
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.6e-98 363.6 262 70.6
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.7e-98 362.8 228 79.8
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 8.7e-97 357.8 340 57.6
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 1.6e-95 353.6 355 57.5
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 5.9e-93 345.1 329 56.8
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 5.9e-93 345.1 285 65.6
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.1e-88 330.9 319 58.3
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 5.9e-85 318.5 322 56.2
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.0e-73 279.3 245 61.2
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 2.5e-67 260.0 255 56.5
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 2.7e-66 256.5 380 45.0
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 5.2e-65 252.3 352 44.3
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 3.7e-63 246.1 185 67.0
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.1e-62 244.6 356 41.3
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 1.4e-62 244.2 210 60.5
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.4e-62 243.4 356 42.4
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.0e-61 240.4 269 56.1
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 8.5e-60 235.0 349 43.8
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 9.2e-54 214.9 188 61.7
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.2e-53 214.5 224 55.4
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 5.0e-52 209.1 217 54.4
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 2.5e-51 206.8 346 41.3
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 4.9e-47 192.6 365 37.8
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 3.0e-44 183.3 176 50.6
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 6.4e-39 165.6 376 35.1
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.7e-36 157.5 117 68.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.5e-35 154.5 345 34.8
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.3e-31 141.4 101 70.3
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.9e-30 137.5 80 87.5
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.9e-27 127.5 147 47.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 9.5e-27 125.2 193 43.5
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.6e-26 124.4 351 33.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 6.8e-25 119.0 107 55.1
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 1.5e-24 117.9 127 48.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.6e-24 117.1 59 98.3
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.9e-23 112.8 85 64.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 8.4e-23 112.1 86 58.1
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.7e-21 107.1 86 55.8
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.4e-17 94.7 149 34.2
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.4e-17 94.7 54 83.3
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.0e-16 90.9 327 26.3
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 2.6e-16 90.5 72 61.1
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.5e-11 74.7 41 80.5
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 6.2e-10 69.3 175 28.0
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 8.1e-10 68.9 127 36.2
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.2e-08 65.1 43 67.4
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-08 64.7 53 54.7


User provided reference genes

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