Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.2e-173 612.5 362 100.0
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.8e-172 609.4 362 99.4
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 2.8e-141 505.8 362 85.4
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 4.1e-140 501.9 365 86.8
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 1.6e-139 500.0 361 84.2
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.5e-137 492.7 346 81.2
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 4.0e-135 485.3 353 82.2
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.5e-134 483.4 359 81.3
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 3.4e-134 482.3 352 82.7
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 1.3e-133 480.3 338 80.8
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 2.2e-133 479.6 264 92.4
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 2.2e-133 479.6 264 92.4
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 7.0e-132 474.6 355 82.8
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 7.0e-132 474.6 353 81.0
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.6e-131 473.4 347 79.3
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 2.3e-130 469.5 265 90.6
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 3.8e-130 468.8 352 81.5
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 1.1e-129 467.2 359 80.8
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.1e-129 467.2 265 90.6
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 1.5e-129 466.8 265 90.2
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.9e-129 466.5 354 80.2
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 2.5e-129 466.1 353 80.2
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 7.3e-129 464.5 341 81.5
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 9.5e-129 464.2 338 79.6
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 1.6e-128 463.4 353 79.3
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 2.8e-128 462.6 352 79.3
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 6.1e-128 461.5 355 75.8
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 6.1e-128 461.5 353 82.7
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 2.3e-127 459.5 346 74.9
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 2.3e-127 459.5 358 78.8
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 3.0e-127 459.1 361 73.7
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 1.5e-126 456.8 266 88.0
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.4e-126 455.7 357 76.2
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 4.4e-126 455.3 352 83.0
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 4.4e-126 455.3 358 75.4
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 4.4e-126 455.3 357 76.8
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 7.5e-126 454.5 319 85.0
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 7.5e-126 454.5 319 85.0
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 7.5e-126 454.5 237 93.2
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 9.8e-126 454.1 357 75.6
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 1.7e-125 453.4 244 90.6
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 3.7e-125 452.2 243 91.4
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 3.7e-125 452.2 360 81.4
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 3.7e-125 452.2 268 87.7
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 6.4e-125 451.4 351 77.8
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 8.3e-125 451.1 352 81.0
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.4e-124 450.3 335 80.3
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.4e-124 449.5 240 93.8
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 2.4e-124 449.5 239 92.1
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 4.1e-124 448.7 345 80.3
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 7.0e-124 448.0 365 78.6
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 9.2e-124 447.6 361 80.9
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 1.2e-123 447.2 353 81.9
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 1.6e-123 446.8 235 93.2
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 2.0e-123 446.4 352 77.0
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 1.0e-122 444.1 235 93.2
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.3e-122 443.0 354 78.2
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 2.3e-122 443.0 354 78.2
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 5.0e-122 441.8 337 77.7
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 1.5e-121 440.3 352 80.1
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.9e-121 439.9 354 78.0
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 2.5e-121 439.5 353 77.6
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 5.6e-121 438.3 346 72.5
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 1.6e-120 436.8 432 65.0
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 2.1e-120 436.4 353 77.6
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 8.0e-120 434.5 359 76.6
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 8.0e-120 434.5 246 87.4
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 1.8e-119 433.3 247 87.4
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.8e-119 433.3 355 76.9
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.8e-119 433.3 355 76.9
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 2.3e-119 433.0 220 95.5
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 2.3e-119 433.0 344 78.2
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 2.3e-119 433.0 239 89.1
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 5.2e-119 431.8 243 88.9
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 7.5e-118 427.9 340 77.4
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 9.8e-118 427.6 339 79.6
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.9e-116 423.3 402 66.7
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 2.4e-116 422.9 372 76.6
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 7.0e-116 421.4 228 90.4
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 1.2e-115 420.6 220 92.3
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 3.5e-115 419.1 228 89.0
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 4.6e-115 418.7 235 88.9
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 8.6e-114 414.5 228 88.6
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 1.9e-113 413.3 353 77.3
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 4.3e-113 412.1 228 88.2
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 4.3e-113 412.1 355 76.1
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 9.5e-113 411.0 228 88.2
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 1.2e-112 410.6 336 74.1
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 8.1e-112 407.9 230 87.4
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 5.2e-111 405.2 228 86.4
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 5.2e-111 405.2 228 86.4
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 5.2e-111 405.2 228 86.4
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 5.2e-111 405.2 228 86.4
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 4.4e-110 402.1 249 81.5
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 1.7e-109 400.2 228 85.5
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.9e-108 396.7 233 84.5
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 5.4e-108 395.2 232 85.3
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 5.1e-106 388.7 241 80.9
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 1.5e-105 387.1 247 79.4
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 7.3e-105 384.8 263 75.3
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.2e-104 384.0 365 65.8
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 4.0e-103 379.0 336 70.8
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 2.0e-102 376.7 208 90.4
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.3e-101 374.0 241 78.0
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 1.9e-97 360.1 308 76.6
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 2.4e-95 353.2 241 75.5
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 8.7e-90 334.7 181 90.6
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 1.9e-89 333.6 342 55.0
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 8.1e-88 328.2 254 67.3
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.6e-86 323.2 226 73.9
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 3.4e-86 322.8 208 75.5
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 4.2e-84 315.8 192 85.4
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 3.9e-82 309.3 354 65.0
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.5e-81 307.4 681 41.1
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 1.3e-77 294.3 288 61.8
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 9.3e-76 288.1 254 79.5
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 3.9e-74 282.7 218 63.8
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 5.1e-74 282.3 213 69.5
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 2.5e-73 280.0 364 52.2
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 3.1e-71 273.1 150 88.7
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 4.0e-71 272.7 189 71.4
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.3e-64 251.1 132 93.2
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.3e-61 241.1 222 59.9
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.6e-59 232.6 222 77.0
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 7.9e-59 231.9 262 67.6
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 1.0e-58 231.5 272 66.2
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 2.8e-56 223.4 195 63.6
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 4.1e-55 219.5 235 71.5
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 3.8e-53 213.0 107 96.3
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 8.5e-53 211.8 108 94.4
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.4e-52 211.1 107 96.3
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 5.5e-52 209.1 108 93.5
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.1e-49 201.4 107 91.6
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 9.7e-49 198.4 102 94.1
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.8e-48 196.1 106 91.5
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 6.9e-47 192.2 212 63.7
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 1.9e-44 184.1 92 95.7
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 6.7e-42 175.6 95 90.5
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 5.7e-41 172.6 95 89.5
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 6.3e-40 169.1 102 82.4
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 2.0e-38 164.1 145 64.8
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 3.3e-33 146.7 83 83.1
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 6.3e-32 142.5 71 93.0
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 6.3e-32 142.5 71 93.0
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 2.7e-27 127.1 202 60.4
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.8e-24 117.1 91 70.3
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 3.5e-22 110.2 58 87.9
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 1.0e-21 108.6 159 67.3
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 7.2e-20 102.4 158 59.5
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 5.2e-18 96.3 119 53.8
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 1.1e-15 88.6 180 65.6
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 3.5e-14 83.6 60 70.0
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 2.3e-10 70.9 103 46.6
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.2e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.9e-10 68.9 38 86.8
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.4e-07 59.7 45 64.4


User provided reference genes

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