Gene: AT2G32600

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G32600
  • Transcript Identifier AT2G32600.1
  • Gene Type Coding gene
  • Location Chr2 : 13833779-13835525 : negative

Gene Family Information

  • ID HOM05D004689
  • #Genes/#Species 156/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G32600.1
  • uniprot O80897

Descriptions

  • Description hydroxyproline-rich glycoprotein family protein
  • Computational description hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, intracellular, spliceosomal complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 18078 Blast hits to 8181 proteins in 576 species: Archae - 26; Bacteria - 1885; Metazoa - 7255; Fungi - 1800; Plants - 3678; Viruses - 906; Other Eukaryotes - 2528 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000245
IBA
Gene Ontologyspliceosomal complex assembly1
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:0071004
IBA
Gene OntologyU2-type prespliceosome1
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR031781 SF3A2 domain
IPR036236 Zinc finger C2H2 superfamily
IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
Mapman id Description
16.2.1.2.3.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.component SF3A2