Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 8.2e-148 527.7 428 100.0
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 2.3e-89 333.6 314 71.0
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 1.3e-87 327.8 366 64.5
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 2.6e-85 320.1 354 63.8
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 2.2e-84 317.0 374 59.1
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.4e-83 313.5 306 64.1
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 4.6e-82 309.3 351 60.7
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 6.0e-82 308.9 359 61.6
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.3e-81 307.0 348 58.3
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 8.7e-81 305.1 320 65.3
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.5e-80 304.3 356 58.7
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.3e-80 303.1 350 58.6
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.6e-79 300.8 362 55.5
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 8.1e-79 298.5 311 59.2
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.1e-78 298.1 359 58.5
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.1e-78 298.1 365 59.7
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.8e-78 297.4 352 58.0
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.4e-78 297.0 362 55.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 3.1e-78 296.6 314 66.9
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.2e-77 294.7 375 53.1
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 3.4e-77 293.1 330 65.5
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.7e-76 290.8 363 62.5
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 8.4e-76 288.5 385 57.4
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.1e-75 288.1 331 61.6
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.4e-75 287.7 342 55.6
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 3.2e-75 286.6 352 50.3
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 3.2e-75 286.6 360 59.2
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 1.2e-74 284.6 356 64.9
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 1.6e-74 284.3 346 62.4
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 3.5e-74 283.1 350 61.1
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 3.5e-74 283.1 375 56.5
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 4.6e-74 282.7 353 62.9
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.0e-73 281.6 324 58.0
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 3.0e-73 280.0 367 54.8
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 3.9e-73 279.6 359 53.5
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 8.7e-73 278.5 230 63.9
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.5e-72 277.7 359 60.4
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.5e-72 276.9 358 60.6
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 3.3e-72 276.6 401 52.6
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 5.7e-72 275.8 404 54.0
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 1.6e-71 274.2 399 51.9
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 2.8e-71 273.5 361 54.8
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 2.8e-71 273.5 369 54.5
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 3.7e-71 273.1 363 51.8
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 6.2e-71 272.3 392 51.8
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 4.0e-70 269.6 348 59.5
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.5e-69 267.7 354 57.1
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 2.0e-69 267.3 357 57.4
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.6e-69 266.9 320 59.1
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 2.6e-69 266.9 324 50.0
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 3.4e-69 266.5 312 51.0
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 5.8e-69 265.8 377 51.7
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.3e-68 264.6 358 50.6
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 3.8e-68 263.1 368 53.3
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 8.4e-68 261.9 353 53.5
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 1.1e-67 261.5 351 59.3
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.4e-67 261.2 338 60.4
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 1.4e-67 261.2 357 57.4
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 3.2e-67 260.0 347 58.5
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 5.5e-67 259.2 356 51.7
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 5.5e-67 259.2 366 50.3
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-66 257.7 357 52.9
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 2.1e-66 257.3 315 59.7
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 2.7e-66 256.9 336 55.4
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 2.7e-66 256.9 339 57.8
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 4.6e-66 256.1 361 53.5
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.9e-66 255.4 366 57.4
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.0e-65 255.0 409 50.4
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.8e-65 254.2 365 65.5
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 2.3e-65 253.8 354 52.0
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.0e-65 253.4 366 65.6
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.9e-65 253.1 366 53.6
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.1e-65 252.7 367 54.0
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 8.7e-65 251.9 338 54.4
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 8.7e-65 251.9 363 55.9
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 1.1e-64 251.5 354 50.6
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.3e-64 250.0 353 52.4
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 3.3e-64 250.0 386 49.5
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 4.3e-64 249.6 342 51.5
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.3e-63 248.1 364 55.8
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 2.8e-63 246.9 382 50.5
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 4.8e-63 246.1 351 57.0
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 6.3e-63 245.7 386 53.9
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.1e-62 245.0 344 47.4
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 2.4e-62 243.8 351 51.9
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 9.0e-62 241.9 314 53.8
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.2e-61 241.5 332 52.7
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.5e-61 241.1 367 50.7
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.5e-61 241.1 369 62.1
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.5e-61 241.1 369 62.1
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 1.5e-61 241.1 344 52.9
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 2.6e-61 240.4 377 52.8
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 3.4e-61 240.0 362 54.4
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.9e-61 239.2 339 54.6
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-60 238.4 369 54.7
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 3.8e-60 236.5 315 55.6
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 3.8e-60 236.5 343 51.3
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 6.5e-60 235.7 351 51.9
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 6.5e-60 235.7 344 57.3
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.1e-59 235.0 392 52.8
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.9e-59 234.2 323 49.2
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 3.2e-59 233.4 377 49.3
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 3.2e-59 233.4 266 57.5
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 3.2e-59 233.4 377 50.4
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 4.2e-59 233.0 344 51.5
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 9.4e-59 231.9 358 51.4
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 9.4e-59 231.9 353 49.3
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.6e-58 231.1 253 53.0
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 2.7e-58 230.3 353 49.3
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 3.6e-58 229.9 383 54.0
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 7.9e-58 228.8 169 67.5
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 9.7e-56 221.9 404 50.0
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.3e-55 221.5 338 51.2
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 2.2e-55 220.7 365 54.5
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.8e-54 217.6 327 51.1
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.6e-53 213.8 262 49.2
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 3.4e-53 213.4 259 57.1
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.3e-52 211.5 376 50.3
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.2e-52 210.7 326 53.4
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 5.0e-52 209.5 375 48.8
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 6.5e-52 209.1 212 57.1
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 1.1e-51 208.4 373 53.4
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 1.9e-51 207.6 122 78.7
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.9e-51 207.6 351 49.0
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 2.5e-51 207.2 332 51.8
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 5.5e-51 206.1 177 60.5
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 1.0e-49 201.8 121 76.9
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 3.0e-49 200.3 293 46.4
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 3.0e-49 200.3 121 76.9
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.0e-48 197.6 347 48.7
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.0e-48 197.6 347 48.7
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 3.3e-48 196.8 298 42.6
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 2.8e-47 193.7 259 52.5
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 8.5e-44 182.2 379 45.4
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 1.5e-43 181.4 383 44.9
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 1.9e-43 181.0 306 41.8
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.9e-43 181.0 386 44.3
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 6.1e-42 176.0 380 45.0
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 1.7e-39 167.9 249 54.2
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 4.2e-35 153.3 278 46.8
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 1.8e-33 147.9 249 47.8
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 3.7e-31 140.2 246 50.0
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.0e-29 134.4 81 77.8
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 5.9e-29 132.9 287 35.9
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 1.4e-22 111.7 265 39.2
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.2e-21 108.6 106 57.5
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-21 108.2 151 45.7
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 1.9e-19 101.3 97 44.3
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 3.0e-17 94.0 120 52.5
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-15 88.2 225 36.0
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 4.9e-15 86.7 284 31.7
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.7e-12 78.2 119 60.5
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 5.2e-09 66.6 99 39.4
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 1.2e-08 65.5 92 40.2
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 2.0e-08 64.7 92 43.5
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 2.0e-08 64.7 94 37.2
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 3.4e-08 63.9 92 39.1
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 1.7e-07 61.6 41 63.4
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.7e-07 61.6 92 37.0
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 2.2e-07 61.2 92 37.0
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 4.9e-07 60.1 102 34.3
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 4.9e-07 60.1 34 70.6
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 8.3e-07 59.3 96 40.6
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 8.3e-07 59.3 95 36.8
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 1.1e-06 58.9 92 35.9
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 1.4e-06 58.5 92 37.0
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 1.4e-06 58.5 92 41.3
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 1.9e-06 58.2 33 69.7
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 3.2e-06 57.4 41 61.0
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 3.2e-06 57.4 41 63.4
VMungo1127G0108 Vigna mungo HOM05D005264 ORTHO05D005428 3.2e-06 57.4 41 61.0
Ca_03040_v3 Cicer arietinum L. HOM05D005264 ORTHO05D005428 4.1e-06 57.0 41 58.5
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 5.4e-06 56.6 37 62.2
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 5.4e-06 56.6 33 66.7
Medtr4g074230 Medicago truncatula HOM05D005264 ORTHO05D005428 5.4e-06 56.6 41 56.1
Psat7g174160 Pisum sativum HOM05D005264 ORTHO05D005428 5.4e-06 56.6 41 56.1
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 5.4e-06 56.6 30 70.0
TPR.G21570 Trifolium pratense HOM05D005264 ORTHO05D005428 5.4e-06 56.6 41 56.1
arahy.Tifrunner.gnm1.ann1.4UU5Y7 Arachis hypogaea HOM05D005264 ORTHO05D005428 7.0e-06 56.2 41 58.5
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 9.2e-06 55.8 98 34.7


User provided reference genes

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