Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1410 Trochodendron aralioides HOM05D000104 ORTHO05D004059 3.5e-37 157.9 86 100.0
Nn3g21341 Nelumbo nucifera HOM05D000104 ORTHO05D004059 7.7e-13 77.0 81 56.8
TAR362G0596 Trochodendron aralioides HOM05D000104 ORTHO05D004059 5.0e-12 74.3 79 57.0
Aqoxy5G00651 Aquilegia oxysepala HOM05D000104 ORTHO05D004059 5.5e-11 70.9 81 55.6
PSO210G7761 Papaver somniferum HOM05D000104 ORTHO05D004059 1.6e-10 69.3 75 58.7
CSS0038902 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 2.8e-10 68.6 79 54.4
PSO832G0743 Papaver somniferum HOM05D000104 ORTHO05D004059 8.0e-10 67.0 75 57.3
CiPaw.02G085600 Carya illinoinensis HOM05D000104 ORTHO05D004059 1.0e-09 66.6 79 51.9
GSVIVG01017791001 Vitis vinifera HOM05D000104 ORTHO05D004059 1.0e-09 66.6 79 51.9
Lj6C670T12 Lonicera japonica HOM05D000104 ORTHO05D004059 1.4e-09 66.2 79 53.2
QL06p007627 Quercus lobata HOM05D000104 ORTHO05D004059 1.4e-09 66.2 79 49.4
CSS0045860 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 1.8e-09 65.9 74 54.1
CSS0047645 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004059 1.8e-09 65.9 74 54.1
CANSAT78G2178 Cannabis sativa HOM05D000104 ORTHO05D004059 1.8e-09 65.9 79 51.9
CiPaw.01G152100 Carya illinoinensis HOM05D000104 ORTHO05D004059 2.3e-09 65.5 75 53.3
Dinv44417 Davidia involucrata HOM05D000104 ORTHO05D004059 3.0e-09 65.1 71 56.3
MBI18_g12430_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004059 3.0e-09 65.1 71 56.3
Actinidia01938 Actinidia chinensis HOM05D000104 ORTHO05D004059 4.0e-09 64.7 74 55.4
Actinidia40235 Actinidia chinensis HOM05D000104 ORTHO05D004059 4.0e-09 64.7 74 55.4
ATR0706G043 Amborella trichopoda HOM05D000104 ORTHO05D004059 4.0e-09 64.7 82 46.3
MD16G1173900 Malus domestica HOM05D000104 ORTHO05D004059 4.0e-09 64.7 75 52.0
Atru.chr4.2776 Acer truncatum HOM05D000104 ORTHO05D004059 5.2e-09 64.3 78 51.3
Ciclev10004220m.g Citrus clementina HOM05D000104 ORTHO05D004059 5.2e-09 64.3 77 51.9
Oeu026198.1 Olea europaea HOM05D000104 ORTHO05D004059 6.8e-09 63.9 77 53.2
Rhsim04G0217800 Rhododendron simsii HOM05D000104 ORTHO05D004059 8.9e-09 63.5 72 54.2
FvH4_4g17400 Fragaria vesca HOM05D000104 ORTHO05D004059 1.2e-08 63.2 79 49.4
Hund24922 Selenicereus undatus HOM05D000104 ORTHO05D004059 1.2e-08 63.2 72 55.6
Haze_01251 Corylus avellana HOM05D000104 ORTHO05D004059 2.0e-08 62.4 79 48.1
Lj3C812G10 Lonicera japonica HOM05D000104 ORTHO05D004059 2.0e-08 62.4 73 53.4
vmacro08189 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 2.0e-08 62.4 74 51.4
vmacro22484 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 2.0e-08 62.4 74 51.4
Cpa.g.sc16.129 Carica papaya HOM05D000104 ORTHO05D004059 2.6e-08 62.0 75 50.7
Gohir.A10G161000 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.6e-08 62.0 71 54.9
Gohir.D10G167400 Gossypium hirsutum HOM05D000104 ORTHO05D004059 2.6e-08 62.0 71 54.9
Gorai.011G187000 Gossypium raimondii HOM05D000104 ORTHO05D004059 2.6e-08 62.0 71 54.9
TAR636G2253 Trochodendron aralioides HOM05D000104 ORTHO05D004059 2.6e-08 62.0 75 52.0
arahy.Tifrunner.gnm1.ann1.8XLM1I Arachis hypogaea HOM05D000104 ORTHO05D004059 3.4e-08 61.6 76 52.6
arahy.Tifrunner.gnm1.ann1.QF6VR4 Arachis hypogaea HOM05D000104 ORTHO05D004059 3.4e-08 61.6 76 52.6
Duzib052G0958 Durio zibethinus HOM05D000104 ORTHO05D004059 3.4e-08 61.6 78 50.0
Migut.G00196 Erythranthe guttata HOM05D000104 ORTHO05D004059 3.4e-08 61.6 71 54.9
Aqoxy2G03083 Aquilegia oxysepala HOM05D000104 ORTHO05D004059 4.4e-08 61.2 75 50.7
COL.COLO4_13917 Corchorus olitorius HOM05D000104 ORTHO05D004059 4.4e-08 61.2 78 50.0
Migut.N00114 Erythranthe guttata HOM05D000104 ORTHO05D004059 4.4e-08 61.2 71 57.7
Lj4g0009367 Lotus japonicus HOM05D000104 ORTHO05D004059 4.4e-08 61.2 76 51.3
SalBow5G1000 Salvia bowleyana HOM05D000104 ORTHO05D004059 4.4e-08 61.2 71 57.7
MSTRG.24782 Avicennia marina HOM05D000104 ORTHO05D004059 5.7e-08 60.8 71 56.3
FAN12G3725 Fragaria x ananassa HOM05D000104 ORTHO05D004059 5.7e-08 60.8 77 48.1
Glyma.15G097000 Glycine max HOM05D000104 ORTHO05D004059 5.7e-08 60.8 71 52.1
Rhsim02G0012600 Rhododendron simsii HOM05D000104 ORTHO05D004059 5.7e-08 60.8 71 53.5
Solyc01g067390.4 Solanum lycopersicum HOM05D000104 ORTHO05D004059 5.7e-08 60.8 71 53.5
Sopen01g029280 Solanum pennellii HOM05D000104 ORTHO05D004059 5.7e-08 60.8 71 53.5
Cc03_g02210 Coffea canephora HOM05D000104 ORTHO05D004059 7.5e-08 60.5 71 54.9
Os01g0367900 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004059 7.5e-08 60.5 80 48.8
Prupe.1G140700 Prunus persica HOM05D000104 ORTHO05D004059 7.5e-08 60.5 75 48.0
HanXRQChr03g0080881 Helianthus annuus HOM05D000104 ORTHO05D004059 9.8e-08 60.1 96 45.8
SalBow2G0378 Salvia bowleyana HOM05D000104 ORTHO05D004059 9.8e-08 60.1 71 53.5
CDE05G1697 Ceratophyllum demersum HOM05D000104 ORTHO05D004059 1.3e-07 59.7 74 50.0
Glyma.13G215900 Glycine max HOM05D000104 ORTHO05D004059 1.3e-07 59.7 76 48.7
SGA_v2.0_scaffold155G37253 Striga asiatica HOM05D000104 ORTHO05D004059 1.3e-07 59.7 71 52.1
Gohir.A09G240700 Gossypium hirsutum HOM05D000104 ORTHO05D004059 1.7e-07 59.3 71 52.1
Peaxi162Scf00386g00817 Petunia axillaris HOM05D000104 ORTHO05D004059 1.7e-07 59.3 71 54.9
Phvul.003G101700 Phaseolus vulgaris HOM05D000104 ORTHO05D004059 1.7e-07 59.3 71 56.3
HPP92_013699 Vanilla planifolia HOM05D000104 ORTHO05D004059 1.7e-07 59.3 71 52.1
MELO3C021353.2 Cucumis melo HOM05D000104 ORTHO05D004059 2.2e-07 58.9 71 49.3
FAN07G2499 Fragaria x ananassa HOM05D000104 ORTHO05D004059 2.2e-07 58.9 77 48.1
FAN12G3941 Fragaria x ananassa HOM05D000104 ORTHO05D004059 2.2e-07 58.9 77 48.1
FAN22G2315 Fragaria x ananassa HOM05D000104 ORTHO05D004059 2.2e-07 58.9 77 48.1
Lalb_Chr12g0196491 Lupinus albus HOM05D000104 ORTHO05D004059 2.2e-07 58.9 76 50.0
Lalb_Chr18g0055671 Lupinus albus HOM05D000104 ORTHO05D004059 2.2e-07 58.9 71 49.3
Manes.15G015800 Manihot esculenta HOM05D000104 ORTHO05D004059 2.2e-07 58.9 71 53.5
RcHm_v2.0_Chr4g0421321 Rosa chinensis HOM05D000104 ORTHO05D004059 2.2e-07 58.9 79 50.6
Sed0025792 Sechium edule HOM05D000104 ORTHO05D004059 2.2e-07 58.9 71 50.7
Thhalv10019967m.g Eutrema salsugineum HOM05D000104 ORTHO05D004059 2.8e-07 58.5 71 50.7
Gohir.D09G241400 Gossypium hirsutum HOM05D000104 ORTHO05D004059 3.7e-07 58.2 71 50.7
Sc19g0004980 Simmondsia chinensis HOM05D000104 ORTHO05D004059 3.7e-07 58.2 75 49.3
SGA_v2.0_scaffold57G20227 Striga asiatica HOM05D000104 ORTHO05D004059 3.7e-07 58.2 87 46.0
vmacro15253 Vaccinium macrocarpon HOM05D000104 ORTHO05D004059 3.7e-07 58.2 71 50.7
THA.LOC104802723 Tarenaya hassleriana HOM05D000104 ORTHO05D004059 4.9e-07 57.8 69 50.7
TPR.G1518 Trifolium pratense HOM05D000104 ORTHO05D004059 4.9e-07 57.8 70 50.0
arahy.Tifrunner.gnm1.ann1.380C72 Arachis hypogaea HOM05D000104 ORTHO05D004059 6.3e-07 57.4 71 53.5
arahy.Tifrunner.gnm1.ann1.QCS8A7 Arachis hypogaea HOM05D000104 ORTHO05D004059 6.3e-07 57.4 71 53.5
CsaV3_6G017380 Cucumis sativus L. HOM05D000104 ORTHO05D004059 6.3e-07 57.4 71 47.9
Gohir.D02G052600 Gossypium hirsutum HOM05D000104 ORTHO05D004059 6.3e-07 57.4 78 46.2
Gorai.005G058400 Gossypium raimondii HOM05D000104 ORTHO05D004059 6.3e-07 57.4 78 46.2
Gorai.006G264900 Gossypium raimondii HOM05D000104 ORTHO05D004059 6.3e-07 57.4 71 50.7
CDE09G0260 Ceratophyllum demersum HOM05D000104 ORTHO05D004059 8.3e-07 57.0 78 46.2
Oeu029265.2 Olea europaea HOM05D000104 ORTHO05D004059 8.3e-07 57.0 71 52.1
TWI73G0509 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 8.3e-07 57.0 71 50.7
VMungo1215G1275 Vigna mungo HOM05D000104 ORTHO05D004059 8.3e-07 57.0 71 56.3
ClCG06G005340 Citrullus lanatus HOM05D000104 ORTHO05D004059 1.1e-06 56.6 71 47.9
Gorai.003G095600 Gossypium raimondii HOM05D001853 ORTHO05D001908 1.1e-06 56.6 58 58.6
CAN.G580.12 Capsicum annuum HOM05D000104 ORTHO05D004059 1.4e-06 56.2 71 49.3
ECA240G3320 Erigeron canadensis HOM05D001942 ORTHO05D004059 1.4e-06 56.2 67 55.2
Glyma.07G250700 Glycine max HOM05D000104 ORTHO05D004059 1.4e-06 56.2 71 53.5
Glyma.17G023600 Glycine max HOM05D000104 ORTHO05D004059 1.4e-06 56.2 71 53.5
Manes.03G191900 Manihot esculenta HOM05D000104 ORTHO05D004059 1.4e-06 56.2 71 50.7
Thecc.04G279200 Theobroma cacao HOM05D000104 ORTHO05D004059 1.4e-06 56.2 76 51.3
Zm00001eb131790 Zea mays HOM05D000104 ORTHO05D004059 1.4e-06 56.2 74 48.6
FAN17G2543 Fragaria x ananassa HOM05D000104 ORTHO05D004059 1.8e-06 55.8 77 50.6
Psat1g187480 Pisum sativum HOM05D000104 ORTHO05D004059 1.8e-06 55.8 70 50.0
BcaB04g20383 Brassica carinata HOM05D000104 ORTHO05D004059 2.4e-06 55.5 71 46.5
Nitab4.5_0001459g0150 Nicotiana tabacum HOM05D000104 ORTHO05D004059 2.4e-06 55.5 71 47.9
Nitab4.5_0002148g0030 Nicotiana tabacum HOM05D000104 ORTHO05D004059 2.4e-06 55.5 71 47.9
LjContig00389g0006961 Lotus japonicus HOM05D000104 ORTHO05D004059 3.1e-06 55.1 79 44.3
Medtr2g020000 Medicago truncatula HOM05D000104 ORTHO05D004059 3.1e-06 55.1 70 52.9
TPR.G28791 Trifolium pratense HOM05D000104 ORTHO05D004059 3.1e-06 55.1 77 45.5
Sp3g05320 Schrenkiella parvula HOM05D000104 ORTHO05D004059 4.1e-06 54.7 73 46.6
VMungo0540G0816 Vigna mungo HOM05D000104 ORTHO05D004059 4.1e-06 54.7 71 50.7
AUR62042647 Chenopodium quinoa HOM05D000104 ORTHO05D004059 5.4e-06 54.3 83 47.0
AUR62043504 Chenopodium quinoa HOM05D000104 ORTHO05D004059 5.4e-06 54.3 83 47.0
Dinv38315 Davidia involucrata HOM05D000104 ORTHO05D004059 5.4e-06 54.3 39 74.4
Gohir.A02G047300 Gossypium hirsutum HOM05D000104 ORTHO05D004059 5.4e-06 54.3 78 46.2
Os05g0150300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004059 7.0e-06 53.9 44 61.4
Phvul.006G162200 Phaseolus vulgaris HOM05D000104 ORTHO05D004059 7.0e-06 53.9 79 45.6
Potri.008G205600 Populus trichocarpa HOM05D000104 ORTHO05D004059 7.0e-06 53.9 71 49.3
Solyc06g054560.3 Solanum lycopersicum HOM05D000104 ORTHO05D004059 7.0e-06 53.9 71 49.3
Sopen06g019630 Solanum pennellii HOM05D000104 ORTHO05D004059 7.0e-06 53.9 71 49.3
PGSC0003DMG400030785 Solanum tuberosum HOM05D000104 ORTHO05D004059 7.0e-06 53.9 71 49.3
TWI53G0508 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 7.0e-06 53.9 71 47.9
TWI53G1517 Tripterygium wilfordii HOM05D000104 ORTHO05D004059 7.0e-06 53.9 71 47.9
Lsat_1_v5_gn_5_52080 Lactuca sativa HOM05D000104 ORTHO05D004059 9.2e-06 53.5 75 48.0
Sabra10G0016100 Salix brachista HOM05D000104 ORTHO05D004059 9.2e-06 53.5 71 47.9


User provided reference genes

Program Settings