Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1413.3 716 100.0
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1322.8 712 93.5
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1318.1 712 93.1
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 711 91.7
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 709 91.5
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 711 90.7
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1296.2 711 90.6
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 711 90.4
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 711 90.7
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 711 90.3
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 711 90.4
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1293.1 712 90.6
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1291.9 712 90.9
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1291.6 711 90.0
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1290.4 711 90.3
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 711 89.9
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1288.1 711 90.0
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1286.6 709 90.6
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1286.2 709 90.6
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1284.6 711 90.0
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1283.9 708 90.0
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 711 89.7
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1280.0 711 88.9
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 711 89.3
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1277.3 713 89.2
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1276.5 711 88.9
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1276.5 711 89.0
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1275.8 711 89.3
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1275.0 711 89.2
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1274.6 711 88.7
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1274.2 713 89.2
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1272.7 711 88.6
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1271.5 711 88.7
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1270.4 711 88.6
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1270.0 711 88.2
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 711 88.3
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1268.4 738 86.2
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 732 86.9
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1268.1 732 86.9
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 712 88.6
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 711 88.3
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1267.7 711 88.9
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1267.3 711 88.0
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 711 88.0
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 717 88.0
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1266.1 711 88.0
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1265.4 712 89.3
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1265.0 711 88.3
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1263.8 711 87.8
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1262.3 711 87.9
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1261.9 711 87.8
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1259.2 711 88.2
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1258.4 712 88.1
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1256.9 710 87.5
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1253.0 711 87.9
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1253.0 715 87.0
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1252.7 711 87.9
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1252.7 710 87.7
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1249.6 710 87.5
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1249.6 711 87.2
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1249.2 711 87.3
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1248.4 711 86.5
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1248.0 711 87.1
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1247.6 713 86.7
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1247.3 711 86.8
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1246.5 714 87.5
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1246.1 714 87.5
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1246.1 712 86.1
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1245.7 711 85.8
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1245.0 714 87.7
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1244.2 711 85.9
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1244.2 711 87.8
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1243.8 711 86.8
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1243.0 711 86.5
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1242.6 713 87.0
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1242.6 713 87.2
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1242.6 712 86.8
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1241.9 712 85.8
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1241.1 711 85.9
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1241.1 708 86.7
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1240.7 711 86.9
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1240.3 711 86.1
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1240.3 712 86.5
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1239.9 711 86.2
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1239.6 710 87.3
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1238.8 711 85.8
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1237.6 712 86.0
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1237.6 711 85.7
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1236.9 711 86.6
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1236.9 712 85.8
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1234.9 711 85.4
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1234.6 711 85.5
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1233.8 711 85.5
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 711 85.2
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 712 86.0
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 708 86.0
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1231.5 712 85.5
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1230.7 711 85.4
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1229.2 711 85.0
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 712 85.3
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1226.5 708 85.9
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1223.8 773 80.5
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1223.0 792 79.4
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1221.5 711 85.0
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1220.7 711 85.1
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1216.4 711 84.8
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1210.3 727 82.9
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1210.3 675 89.8
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1208.7 714 84.5
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1198.3 689 86.2
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1196.8 747 80.9
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1186.8 704 83.8
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1183.3 711 83.7
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1179.9 715 82.5
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1178.3 705 84.8
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1171.8 717 82.0
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1169.5 642 89.6
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1149.4 714 81.1
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1146.3 712 81.3
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1098.6 706 77.8
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1095.1 587 90.6
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1083.6 604 87.9
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1083.2 711 75.9
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 4.9e-312 1074.7 654 80.3
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 2.2e-307 1058.5 707 74.3
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 4.0e-304 1047.7 707 73.3
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 2.8e-297 1025.0 634 79.8
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 7.6e-231 804.3 634 62.9
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 6.1e-220 768.1 666 59.6
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.2e-213 745.7 512 76.6
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 6.7e-211 738.0 453 82.6
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 6.5e-206 721.5 616 61.4
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.0e-203 714.1 465 78.7
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.0e-198 697.6 399 87.5
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.8e-198 695.7 399 87.2
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.2e-194 684.1 492 72.4
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 7.9e-135 485.3 263 89.7
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 3.2e-120 436.8 395 60.5
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 4.1e-99 366.7 219 87.2
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 2.0e-82 311.2 578 37.7
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 6.1e-71 273.1 143 91.6
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 1.3e-60 238.8 125 90.4
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 8.3e-60 236.1 170 72.4
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 8.3e-44 183.0 98 90.8
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.1e-40 172.6 294 37.4
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 3.1e-38 164.5 84 90.5
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 5.4e-35 153.7 80 90.0
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.3e-33 149.1 80 90.0
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 2.2e-28 131.7 72 86.1
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 8.7e-25 119.8 71 81.7
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 9.6e-24 116.3 69 75.4
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 2.8e-23 114.8 70 78.6
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 8.4e-20 103.2 108 53.7
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 1.1e-19 102.8 85 57.6
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 2.4e-19 101.7 222 34.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 5.4e-19 100.5 73 74.0
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.3e-17 95.9 67 71.6
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 8.7e-17 93.2 85 52.9
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.1e-16 92.8 67 68.7
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 1.8e-14 85.5 70 64.3
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.8e-14 85.5 47 87.2
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 6.9e-14 83.6 46 87.0
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 9.0e-14 83.2 45 88.9
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 1.2e-13 82.8 71 71.8
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 1.3e-12 79.3 47 80.9
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 8.4e-12 76.6 61 60.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.0e-09 69.7 42 71.4
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.0e-09 69.7 41 80.5
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 1.1e-08 66.2 144 30.6
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 1.1e-08 66.2 33 93.9
ATR0561G078 Amborella trichopoda HOM05D004298 ORTHO05D065354 9.0e-06 56.6 72 51.4


User provided reference genes

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