Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 3.8e-235 817.8 403 100.0
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 3.0e-200 701.8 407 86.2
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 1.6e-198 696.0 410 84.4
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 2.6e-196 688.7 410 84.6
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 4.5e-196 688.0 406 85.0
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 1.4e-194 682.9 384 87.0
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 7.2e-194 680.6 439 79.0
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 2.1e-193 679.1 409 83.1
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 7.9e-193 677.2 439 78.8
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.8e-192 676.0 414 81.6
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 1.1e-191 673.3 411 82.5
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 1.5e-191 672.9 366 89.6
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 2.6e-191 672.2 366 89.3
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 2.6e-191 672.2 415 80.7
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 5.7e-191 671.0 410 82.7
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 5.7e-191 671.0 401 83.5
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 7.4e-191 670.6 357 91.0
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 9.7e-191 670.2 416 80.3
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.7e-190 669.5 428 80.6
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 4.8e-190 667.9 408 82.6
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 4.8e-190 667.9 405 82.2
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 6.3e-190 667.5 370 88.1
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 1.1e-189 666.8 379 86.0
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.4e-189 666.4 403 83.4
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 9.1e-189 663.7 403 80.9
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 1.2e-188 663.3 403 83.1
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.2e-188 663.3 403 81.9
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.6e-188 662.1 415 80.7
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 7.7e-188 660.6 379 86.3
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.7e-187 659.4 374 87.2
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.2e-187 659.1 404 80.7
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 2.9e-187 658.7 421 80.0
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 2.5e-186 655.6 407 81.3
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 5.5e-186 654.4 457 73.7
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 2.7e-185 652.1 400 80.8
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 2.7e-185 652.1 356 88.5
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 3.6e-185 651.7 368 86.4
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 3.6e-185 651.7 403 80.9
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 1.4e-184 649.8 365 87.7
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 3.9e-184 648.3 403 80.1
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 3.3e-183 645.2 369 85.6
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 2.8e-182 642.1 366 86.1
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 3.7e-182 641.7 421 76.7
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 6.3e-182 641.0 405 80.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.4e-181 639.8 427 78.2
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.4e-181 639.0 384 81.5
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 7.0e-181 637.5 412 76.2
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 7.0e-181 637.5 347 88.8
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 7.0e-181 637.5 354 87.0
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 2.0e-180 636.0 415 75.4
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 2.0e-180 636.0 412 76.0
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 2.0e-180 636.0 415 75.4
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 3.5e-180 635.2 379 83.4
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 4.5e-180 634.8 354 84.5
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 4.5e-180 634.8 361 85.3
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 2.2e-179 632.5 371 83.0
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 5.0e-179 631.3 363 84.6
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 1.1e-178 630.2 356 83.4
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 1.5e-178 629.8 415 74.9
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 2.5e-178 629.0 412 77.7
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 3.2e-178 628.6 419 77.8
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 5.5e-178 627.9 366 84.7
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 9.4e-178 627.1 404 77.7
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 2.7e-177 625.5 385 81.3
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 8.0e-177 624.0 380 80.5
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 3.0e-176 622.1 407 79.1
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 8.8e-176 620.5 410 78.0
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 9.7e-175 617.1 370 83.0
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 6.3e-174 614.4 407 76.9
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 8.2e-174 614.0 408 77.9
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 1.1e-173 613.6 500 65.4
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 2.4e-173 612.5 372 81.2
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 2.4e-173 612.5 403 77.7
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 3.1e-173 612.1 369 83.5
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 5.3e-173 611.3 411 74.9
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 7.0e-173 610.9 409 77.8
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 9.1e-173 610.5 364 82.1
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 2.0e-172 609.4 375 79.2
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 2.7e-172 609.0 397 77.8
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 4.5e-172 608.2 408 75.7
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 2.9e-171 605.5 369 81.6
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 8.5e-171 604.0 396 78.0
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 5.5e-170 601.3 395 79.0
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 8.0e-169 597.4 423 74.0
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 8.8e-168 594.0 418 72.0
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 9.8e-167 590.5 418 71.1
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-166 590.1 355 82.5
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 1.7e-166 589.7 356 82.0
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 2.8e-166 589.0 340 84.1
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 1.1e-165 587.0 403 72.7
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 2.4e-165 585.9 360 78.9
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.3e-163 580.1 418 70.3
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.2e-162 574.3 327 85.0
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 7.2e-162 574.3 327 85.0
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 9.5e-162 573.9 414 71.0
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.2e-161 573.5 401 73.3
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 2.1e-161 572.8 381 75.6
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 3.6e-161 572.0 364 78.3
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 5.7e-159 564.7 353 76.2
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 6.3e-158 561.2 340 81.5
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.7e-156 555.8 404 71.0
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.1e-153 546.2 542 57.0
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 2.3e-152 542.7 455 63.1
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 4.0e-152 542.0 389 68.1
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 4.9e-150 535.0 574 54.4
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.7e-148 529.3 355 73.5
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 3.6e-145 518.8 373 70.0
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 5.2e-136 488.4 494 55.5
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 6.6e-123 444.9 435 59.3
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.8e-120 436.8 380 61.3
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 2.6e-119 433.0 358 59.8
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.4e-112 409.8 209 92.8
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 8.4e-110 401.4 203 94.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 1.1e-109 401.0 357 55.2
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 2.7e-108 396.4 381 54.1
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 2.9e-78 296.6 292 51.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.2e-61 239.6 380 37.6
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 3.0e-59 233.4 114 96.5
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.3e-57 228.0 122 86.9
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 8.3e-49 198.7 181 60.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 6.1e-44 182.6 111 80.2
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 3.1e-40 170.2 211 49.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 6.4e-33 146.0 103 68.9
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 3.2e-32 143.7 69 92.8
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 2.8e-28 130.6 73 89.0
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 6.2e-28 129.4 85 72.9
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 8.9e-27 125.6 84 71.4
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.0e-22 112.1 80 68.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.6e-20 103.6 53 86.8
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 4.1e-16 90.1 43 93.0
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 7.3e-13 79.3 62 62.9
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.0e-11 73.6 43 81.4
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 5.2e-11 73.2 71 59.2
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 2.2e-09 67.8 38 73.7
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 7.1e-08 62.8 71 50.7
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 1.2e-07 62.0 39 69.2


User provided reference genes

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