Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.2e-223 777.3 374 100.0
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.0e-157 560.5 368 74.2
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.2e-150 537.0 380 70.8
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.2e-150 537.0 380 70.0
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.6e-150 536.6 367 71.1
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 4.5e-150 535.0 368 70.7
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 2.2e-149 532.7 362 71.8
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 8.5e-149 530.8 380 69.5
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.2e-148 528.9 376 70.2
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 6.1e-147 524.6 365 68.5
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.4e-146 523.5 363 68.0
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 2.0e-145 519.6 371 68.7
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 4.4e-145 518.5 362 69.6
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.4e-143 513.5 364 66.2
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.4e-143 512.7 362 66.6
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.7e-142 509.2 369 68.0
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.5e-142 508.8 371 68.7
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 3.5e-142 508.8 363 66.4
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 5.9e-142 508.1 363 69.4
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 7.7e-142 507.7 364 66.2
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 1.0e-141 507.3 362 68.5
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 1.1e-140 503.8 366 64.5
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 9.4e-140 500.7 367 65.7
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 2.1e-139 499.6 365 67.9
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.4e-138 496.9 370 66.5
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 4.0e-138 495.4 370 65.9
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 8.8e-138 494.2 362 65.5
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 2.0e-137 493.0 366 64.5
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 4.4e-137 491.9 360 67.5
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.4e-137 491.9 363 65.8
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 7.5e-137 491.1 362 66.0
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 7.5e-137 491.1 364 67.3
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 7.5e-137 491.1 366 63.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 9.8e-137 490.7 368 62.5
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.3e-136 490.3 362 64.9
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.3e-136 490.3 360 66.7
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 1.3e-136 490.3 366 62.0
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.7e-136 490.0 366 64.5
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.8e-136 489.2 359 67.1
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 3.7e-136 488.8 366 63.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 8.3e-136 487.6 366 63.4
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 8.3e-136 487.6 357 65.5
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.4e-135 486.9 361 66.2
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.4e-135 485.0 366 63.7
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.5e-134 482.3 366 63.4
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 4.5e-134 481.9 366 62.6
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.3e-133 480.3 364 64.6
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 3.8e-133 478.8 437 56.5
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 5.0e-133 478.4 358 64.2
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.5e-132 476.9 364 63.2
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 4.2e-132 475.3 334 68.0
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 4.2e-132 475.3 414 54.8
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 7.2e-132 474.6 493 52.7
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 2.1e-131 473.0 359 64.6
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.6e-131 472.2 366 61.7
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 6.1e-131 471.5 363 63.9
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 6.1e-131 471.5 363 63.9
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.2e-130 468.4 363 64.2
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 2.8e-128 462.6 437 55.6
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 8.3e-128 461.1 373 60.1
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.4e-127 460.3 351 62.1
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 9.2e-127 457.6 363 61.2
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 3.5e-126 455.7 370 60.5
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 3.5e-126 455.7 360 61.1
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 5.9e-126 454.9 365 60.5
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 5.9e-126 454.9 365 60.5
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 7.8e-126 454.5 360 61.7
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.3e-125 453.8 365 60.5
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 5.0e-125 451.8 366 59.8
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 5.0e-125 451.8 365 60.3
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 6.6e-125 451.4 367 61.0
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 6.6e-125 451.4 348 61.5
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 8.6e-125 451.1 366 60.7
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 1.5e-124 450.3 365 59.2
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 4.3e-124 448.7 367 60.8
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 4.3e-124 448.7 367 60.8
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 4.3e-124 448.7 365 59.7
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 4.3e-124 448.7 363 61.7
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.2e-123 447.2 368 59.2
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 3.6e-123 445.7 331 68.3
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 6.1e-123 444.9 358 60.9
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 1.0e-122 444.1 362 59.4
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.4e-122 443.7 362 60.8
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 8.9e-122 441.0 360 60.0
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.5e-121 440.3 365 58.1
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 2.0e-121 439.9 376 59.6
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.0e-121 439.9 364 59.1
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.0e-121 439.9 362 60.2
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 4.4e-121 438.7 366 59.6
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 2.2e-120 436.4 358 59.8
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 2.9e-120 436.0 365 58.9
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.4e-119 433.0 365 58.4
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 5.4e-119 431.8 372 57.5
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.5e-118 429.1 360 57.8
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.3e-117 426.4 304 69.4
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 4.7e-115 418.7 409 52.8
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 1.5e-113 413.7 315 64.8
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.4e-113 412.5 363 57.9
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 9.8e-113 411.0 389 52.2
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 7.0e-111 404.8 362 53.0
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.8e-106 390.2 297 66.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 4.0e-106 389.0 273 67.4
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 4.9e-104 382.1 271 66.4
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 3.2e-103 379.4 358 54.5
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 4.6e-102 375.6 362 54.1
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 3.0e-101 372.9 357 53.5
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 1.4e-95 354.0 331 54.4
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.7e-93 347.1 252 67.1
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 4.3e-92 342.4 428 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 8.4e-88 328.2 417 42.4
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.7e-85 320.5 210 71.4
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 6.2e-83 312.0 383 43.6
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.3e-82 308.9 214 67.3
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.4e-79 300.8 363 46.6
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 3.9e-77 292.7 161 80.1
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.3e-76 289.7 368 42.1
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.6e-75 287.3 131 100.0
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 1.0e-69 268.1 238 59.2
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.2e-64 250.4 129 87.6
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 2.5e-55 220.3 273 45.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.5e-55 220.3 273 45.4
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 1.1e-44 184.9 151 60.9
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 5.9e-41 172.6 126 57.1
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.1e-39 168.3 201 44.3
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.1e-39 168.3 201 44.3
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 9.4e-39 165.2 147 62.6
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 2.3e-37 160.6 212 46.7
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 8.2e-35 152.1 81 85.2
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.7e-32 144.4 83 81.9
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 4.4e-28 129.8 120 55.8
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 6.8e-21 105.9 121 47.9
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.2e-20 105.1 248 31.0
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.9e-16 90.5 94 53.2


User provided reference genes

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