Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.5e-178 628.6 314 100.0
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.2e-149 531.9 313 85.0
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 2.0e-138 496.1 314 80.6
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 3.3e-138 495.4 313 78.9
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.7e-134 483.0 311 79.1
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 4.2e-133 478.4 313 78.6
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 7.2e-133 477.6 313 78.3
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.2e-132 476.9 313 77.3
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 2.7e-132 475.7 313 78.0
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.8e-131 473.0 320 76.2
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.0e-131 472.2 313 77.6
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.0e-131 472.2 313 77.6
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.0e-131 472.2 313 77.6
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 2.6e-130 469.2 311 77.5
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 2.2e-129 466.1 314 77.1
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 2.8e-129 465.7 313 75.7
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 6.3e-129 464.5 313 74.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.1e-128 462.2 313 76.7
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.1e-128 461.8 314 75.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.1e-128 461.8 314 75.2
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 5.3e-128 461.5 313 77.0
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.5e-127 459.9 313 75.4
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.5e-127 459.9 314 76.4
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 4.5e-127 458.4 318 75.5
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.5e-127 458.4 316 75.0
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.7e-127 457.6 314 75.2
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.3e-126 456.8 317 75.7
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 3.8e-126 455.3 315 74.9
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 8.5e-126 454.1 313 74.4
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.1e-125 453.8 319 73.7
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 4.2e-125 451.8 315 75.6
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 5.5e-125 451.4 315 75.6
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 5.5e-125 451.4 315 74.3
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 7.2e-125 451.1 318 74.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 9.4e-125 450.7 317 75.1
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 1.6e-124 449.9 316 75.3
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 2.1e-124 449.5 314 74.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 2.7e-124 449.1 316 75.3
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 6.1e-124 448.0 313 74.8
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 6.1e-124 448.0 319 73.7
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 8.0e-124 447.6 316 74.4
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.0e-123 447.2 314 72.6
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.0e-123 447.2 313 74.1
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.4e-123 446.8 313 72.5
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 1.8e-123 446.4 313 72.5
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 3.0e-123 445.7 314 73.2
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 6.7e-123 444.5 317 73.8
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 8.8e-123 444.1 313 73.2
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.0e-122 443.0 313 73.2
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 2.6e-122 442.6 315 74.3
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 3.3e-122 442.2 352 67.3
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.3e-122 442.2 313 72.8
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 4.4e-122 441.8 319 74.3
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 7.5e-122 441.0 313 72.8
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.3e-121 440.3 313 73.2
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.7e-121 439.9 312 73.1
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.7e-121 439.9 312 73.1
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 5.3e-120 434.9 311 72.3
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 2.0e-119 433.0 313 72.2
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.5e-119 432.2 315 71.7
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.9e-119 431.4 317 71.6
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 7.7e-119 431.0 316 72.5
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.7e-118 429.9 314 72.0
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 2.2e-118 429.5 275 81.8
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 6.5e-118 427.9 316 71.5
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.5e-117 426.8 317 71.0
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.9e-117 426.4 314 71.7
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 9.4e-117 424.1 318 70.4
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.2e-116 423.7 313 70.6
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.6e-116 423.3 349 65.0
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.6e-116 423.3 315 71.1
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 2.1e-116 422.9 293 75.4
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 2.1e-116 422.9 313 71.9
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 2.7e-116 422.5 313 70.3
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 3.6e-116 422.2 314 71.0
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.0e-115 420.6 314 70.1
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 4.0e-115 418.7 313 70.0
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 5.2e-115 418.3 316 70.3
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 6.8e-115 417.9 314 70.7
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 2.6e-114 416.0 312 69.2
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 2.6e-114 416.0 313 70.0
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 3.4e-114 415.6 313 70.6
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 9.8e-114 414.1 324 68.5
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.3e-113 413.7 290 75.2
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 2.8e-113 412.5 313 69.3
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 2.8e-113 412.5 313 69.3
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.8e-113 412.5 313 70.0
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 3.7e-113 412.1 313 69.3
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 3.7e-113 412.1 313 69.0
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 4.8e-113 411.8 313 69.6
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 4.8e-113 411.8 313 69.6
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 4.8e-113 411.8 313 69.6
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.4e-112 410.2 314 69.1
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.4e-112 409.5 224 91.1
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.1e-112 409.1 314 68.2
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 1.2e-111 407.1 318 67.9
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 4.5e-111 405.2 313 68.7
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.4e-107 393.7 314 65.3
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 6.3e-105 384.8 307 68.1
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 4.5e-103 378.6 271 75.3
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.0e-102 375.2 255 74.5
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 5.0e-102 375.2 333 61.9
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.1e-101 374.0 345 58.8
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 5.6e-101 371.7 346 59.0
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 8.0e-100 367.9 348 58.0
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 6.8e-99 364.8 314 61.5
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 2.0e-98 363.2 207 87.4
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.4e-98 362.5 313 64.2
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 7.0e-96 354.8 269 70.3
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 3.5e-95 352.4 323 58.8
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-94 350.5 203 84.7
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.2e-90 337.4 272 66.5
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 2.2e-89 333.2 315 56.5
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.1e-85 320.9 267 63.3
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 4.3e-85 318.9 317 58.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 2.8e-84 316.2 316 58.5
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 6.4e-81 305.1 185 81.6
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 1.3e-70 270.8 419 43.0
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.8e-67 260.4 294 52.4
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 6.8e-67 258.5 257 59.5
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 2.0e-66 256.9 236 60.6
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 9.9e-66 254.6 378 43.7
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.1e-59 234.6 191 68.1
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 4.9e-49 199.1 224 47.8
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 4.2e-48 196.1 191 57.1
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 7.1e-48 195.3 117 84.6
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.2e-47 194.5 192 57.8
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.6e-47 192.6 314 41.7
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.9e-47 191.8 109 89.9
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.4e-45 185.3 95 98.9
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 4.5e-42 176.0 119 73.1
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 1.0e-41 174.9 291 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.4e-40 171.0 208 49.5
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 5.7e-37 159.1 126 67.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 5.7e-37 159.1 126 67.5
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.1e-36 157.1 122 68.9
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.8e-36 156.0 257 42.8
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 1.4e-35 154.5 96 83.3
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.9e-33 146.7 93 81.7
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.6e-31 141.0 195 45.6
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 2.8e-28 130.2 143 56.6
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.1e-27 126.3 80 76.2
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 2.2e-25 120.6 248 37.5
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.9e-25 120.2 63 96.8
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 8.5e-25 118.6 95 67.4
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.7e-12 76.6 128 41.4
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.3e-11 72.8 42 73.8
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.5e-10 69.7 46 73.9
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.9e-08 64.3 33 81.8
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 2.1e-07 60.8 34 79.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 3.6e-07 60.1 62 54.8
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.0e-06 58.5 57 61.4
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 3.0e-06 57.0 43 60.5
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 3.0e-06 57.0 60 46.7
MBI08_g12333_MAGBIO Magnolia biondii HOM05D000230 ORTHO05D242976 3.0e-06 57.0 57 57.9
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 4.0e-06 56.6 57 50.9
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 6.7e-06 55.8 60 45.0
RcHm_v2.0_Chr6g0278431 Rosa chinensis HOM05D002972 ORTHO05D002272 8.8e-06 55.5 42 54.8


User provided reference genes

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