Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.7e-78 294.7 135 100.0
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.0e-76 288.9 131 100.0
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 2.9e-67 258.5 131 87.0
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 2.9e-67 258.5 131 87.0
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.1e-66 256.5 133 84.2
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.5e-66 256.1 128 87.5
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 5.6e-66 254.2 128 86.7
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 5.6e-66 254.2 131 82.4
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 4.7e-65 251.1 130 84.6
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 6.1e-65 250.8 127 85.8
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 8.0e-65 250.4 127 85.0
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 8.0e-65 250.4 126 86.5
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.0e-64 250.0 126 88.1
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.0e-64 250.0 131 84.0
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.0e-64 250.0 128 85.9
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.0e-64 250.0 127 86.6
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.4e-64 249.6 127 88.2
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.3e-64 248.8 126 85.7
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 3.0e-64 248.4 127 86.6
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 3.0e-64 248.4 131 84.0
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 4.0e-64 248.1 127 87.4
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 6.8e-64 247.3 127 85.0
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 8.9e-64 246.9 127 84.3
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 8.9e-64 246.9 127 85.0
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.2e-63 246.5 126 84.9
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.5e-63 246.1 128 82.8
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.5e-63 246.1 126 83.3
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.5e-63 246.1 126 85.7
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.0e-63 245.7 129 82.9
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 2.0e-63 245.7 127 81.9
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.6e-63 245.4 126 84.9
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.6e-63 245.4 126 83.3
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.6e-63 245.4 126 84.1
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 2.6e-63 245.4 129 81.4
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 3.4e-63 245.0 125 85.6
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 7.5e-63 243.8 126 81.7
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 7.5e-63 243.8 128 82.8
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 7.5e-63 243.8 126 83.3
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 9.8e-63 243.4 126 83.3
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 9.8e-63 243.4 126 84.9
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 9.8e-63 243.4 130 78.5
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.2e-62 242.3 129 79.8
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.2e-62 242.3 127 83.5
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 2.9e-62 241.9 143 77.6
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.9e-62 241.9 128 81.2
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.7e-62 241.5 134 81.3
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 3.7e-62 241.5 130 77.7
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 4.9e-62 241.1 127 81.9
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.9e-62 241.1 126 82.5
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.9e-62 241.1 126 84.1
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 4.9e-62 241.1 126 84.1
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 8.3e-62 240.4 126 81.0
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.1e-61 240.0 126 82.5
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-61 240.0 126 81.7
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.1e-61 240.0 129 78.3
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.1e-61 240.0 126 82.5
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.4e-61 239.6 126 81.7
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.8e-61 239.2 127 81.9
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.8e-61 239.2 130 80.8
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.8e-61 239.2 130 80.8
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 1.8e-61 239.2 128 80.5
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 3.2e-61 238.4 126 81.0
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 3.2e-61 238.4 127 80.3
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 4.1e-61 238.0 126 80.2
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 5.4e-61 237.7 126 82.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 5.4e-61 237.7 126 81.7
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 7.0e-61 237.3 131 76.3
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 7.0e-61 237.3 126 81.7
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 9.2e-61 236.9 127 79.5
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 9.2e-61 236.9 129 76.7
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 9.2e-61 236.9 126 83.3
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.2e-60 236.5 129 77.5
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.6e-60 236.1 127 78.7
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.6e-60 236.1 131 76.3
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.6e-60 236.1 131 76.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.6e-60 236.1 131 76.3
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.6e-60 236.1 126 79.4
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 1.6e-60 236.1 126 79.4
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 2.7e-60 235.3 131 74.0
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 2.7e-60 235.3 131 75.6
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.7e-60 235.3 131 76.3
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 2.7e-60 235.3 131 74.0
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 2.7e-60 235.3 125 79.2
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 3.5e-60 235.0 131 74.0
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 4.6e-60 234.6 131 75.6
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 4.6e-60 234.6 126 79.4
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 7.8e-60 233.8 129 76.0
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 7.8e-60 233.8 126 77.8
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.0e-59 233.4 126 77.8
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.0e-59 233.4 130 75.4
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.0e-59 233.4 126 81.0
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.7e-59 232.6 131 75.6
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.7e-59 232.6 126 77.8
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 5.0e-59 231.1 131 74.0
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 6.6e-59 230.7 128 78.9
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 6.6e-59 230.7 126 75.4
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.5e-58 229.6 130 76.2
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 4.3e-58 228.0 126 77.8
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 5.6e-58 227.6 128 77.3
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.8e-57 225.3 126 77.0
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 6.2e-57 224.2 126 76.2
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 6.2e-57 224.2 126 76.2
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.8e-56 222.6 129 75.2
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 6.4e-54 214.2 176 56.8
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.6e-50 201.1 131 71.0
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 5.8e-47 191.0 98 83.7
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 5.8e-47 191.0 130 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 3.7e-46 188.3 155 54.2
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.5e-44 181.8 99 79.8
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 3.5e-44 181.8 126 61.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 5.1e-43 177.9 94 83.0
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 3.3e-42 175.3 128 57.0
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.6e-41 171.8 134 55.2
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.1e-40 170.2 128 63.3
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 9.9e-39 163.7 126 62.7
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 3.6e-33 145.2 94 70.2
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 6.2e-33 144.4 83 81.9
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 3.4e-23 112.1 55 87.3
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.2e-22 109.4 52 86.5
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.9e-21 106.3 50 86.0
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 5.1e-19 98.2 57 75.4
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 5.1e-19 98.2 57 75.4
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 2.0e-15 86.3 155 34.2
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 5.6e-10 68.2 35 80.0


User provided reference genes

Program Settings