Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0604 Trochodendron aralioides HOM05D004017 ORTHO05D004612 2.7e-73 278.5 135 100.0
CSS0022647 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.7e-60 235.3 130 86.2
CSS0031153 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.7e-60 235.3 130 86.2
CSS0034748 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.7e-60 235.3 130 86.2
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 1.0e-59 233.4 133 82.7
CSS0019676 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.3e-59 233.0 130 85.4
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 1.3e-59 233.0 130 85.4
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 2.3e-59 232.3 136 83.1
CSS0016610 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.1e-58 229.9 130 83.8
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.5e-58 229.6 132 82.6
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 1.5e-58 229.6 128 85.2
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 3.3e-58 228.4 130 82.3
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 9.5e-58 226.9 132 80.3
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.8e-57 225.3 132 81.8
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 4.7e-57 224.6 132 80.3
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 8.0e-57 223.8 131 80.2
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 1.8e-56 222.6 129 83.7
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 1.8e-56 222.6 132 78.0
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 2.3e-56 222.2 132 78.0
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 4.0e-56 221.5 128 81.2
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 5.2e-56 221.1 134 78.4
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.2e-55 219.9 129 79.1
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 2.6e-55 218.8 132 76.5
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 5.8e-55 217.6 133 81.2
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 5.8e-55 217.6 133 76.7
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 7.5e-55 217.2 132 76.5
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 1.3e-54 216.5 130 79.2
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 2.2e-54 215.7 130 76.2
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 2.9e-54 215.3 130 76.2
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 2.9e-54 215.3 130 79.2
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 2.9e-54 215.3 133 78.9
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 3.7e-54 214.9 129 78.3
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 4.9e-54 214.5 135 77.0
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 4.9e-54 214.5 127 81.9
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 6.4e-54 214.2 130 77.7
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 6.4e-54 214.2 130 77.7
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 8.3e-54 213.8 131 77.9
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 8.3e-54 213.8 127 79.5
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 1.9e-53 212.6 131 77.9
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.4e-53 212.2 130 77.7
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.4e-53 212.2 130 77.7
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 2.4e-53 212.2 130 77.7
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 2.4e-53 212.2 128 78.1
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 3.2e-53 211.8 128 79.7
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 3.2e-53 211.8 129 77.5
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 4.1e-53 211.5 130 76.2
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 5.4e-53 211.1 131 77.9
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.6e-52 209.5 130 77.7
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 2.0e-52 209.1 126 79.4
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.7e-52 208.8 130 77.7
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 3.5e-52 208.4 126 78.6
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 3.5e-52 208.4 130 76.2
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 4.6e-52 208.0 130 76.2
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 6.0e-52 207.6 125 77.6
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 6.0e-52 207.6 131 75.6
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 7.8e-52 207.2 131 76.3
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 7.8e-52 207.2 130 76.9
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 1.0e-51 206.8 133 73.7
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 1.0e-51 206.8 128 78.1
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 1.3e-51 206.5 131 77.9
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.3e-51 205.7 137 73.7
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 3.0e-51 205.3 129 77.5
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 5.0e-51 204.5 129 76.0
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 6.6e-51 204.1 127 78.7
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 1.1e-50 203.4 129 77.5
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 2.5e-50 202.2 129 76.7
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 4.3e-50 201.4 129 76.0
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 4.3e-50 201.4 129 76.0
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 5.6e-50 201.1 129 76.7
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.2e-49 199.9 142 70.4
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 3.6e-49 198.4 131 73.3
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 3.6e-49 198.4 130 73.8
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 3.6e-49 198.4 130 73.1
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.4e-48 196.4 111 82.9
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 2.3e-48 195.7 129 73.6
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 2.3e-48 195.7 129 73.6
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.0e-47 192.6 129 72.1
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 1.3e-46 189.9 132 69.7
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 2.2e-46 189.1 129 68.2
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 3.2e-45 185.3 129 65.9
Zm00001eb104330 Zea mays HOM05D004017 ORTHO05D004612 5.4e-45 184.5 129 67.4
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 5.4e-45 184.5 129 67.4
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 2.1e-44 182.6 128 71.1
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 1.0e-43 180.3 157 61.8
unitig_747.g21784 Utricularia gibba HOM05D004017 ORTHO05D004612 5.1e-43 177.9 130 66.9
MD15G1230600 Malus domestica HOM05D004017 ORTHO05D004612 1.7e-38 162.9 130 64.6
Zm00001eb104340 Zea mays HOM05D004017 ORTHO05D004612 4.9e-38 161.4 112 67.9
SHI29525 Sapria himalayana HOM05D004017 ORTHO05D004612 1.4e-37 159.8 155 55.5
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 1.9e-37 159.5 110 71.8
ClCG10G000180 Citrullus lanatus HOM05D004017 ORTHO05D004612 2.1e-36 156.0 113 71.7
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 6.0e-36 154.5 146 54.8
Pp3c13_10410 Physcomitrium patens HOM05D004017 ORTHO05D004612 7.3e-34 147.5 139 53.2
arahy.Tifrunner.gnm1.ann1.4CZ79I Arachis hypogaea HOM05D004017 ORTHO05D004612 5.2e-32 141.4 85 78.8
arahy.Tifrunner.gnm1.ann1.FZX4ED Arachis hypogaea HOM05D004017 ORTHO05D004612 5.2e-32 141.4 85 78.8
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.7e-30 136.3 92 69.6
Cre07.g336650 Chlamydomonas reinhardtii HOM05D004017 ORTHO05D004612 7.4e-18 94.4 98 45.9
PRCOL_00002079 Prasinoderma coloniale HOM05D004017 ORTHO05D004612 3.6e-17 92.0 126 42.9
Ah.03g142840 Amaranthus hybridus HOM05D004017 ORTHO05D004612 2.4e-16 89.4 118 39.8
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 1.4e-13 80.1 44 86.4
MCO07G573 Micromonas commoda HOM05D004017 ORTHO05D004612 5.5e-13 78.2 84 47.6
CBR_g57065 Chara braunii HOM05D004017 ORTHO05D004612 1.0e-11 73.9 94 45.7
Actinidia24339 Actinidia chinensis HOM05D002199 ORTHO05D007829 9.0e-08 60.8 107 32.7
MSTRG.18164 Avicennia marina HOM05D002199 ORTHO05D007829 2.0e-07 59.7 105 33.3
Medtr1g088720 Medicago truncatula HOM05D002199 ORTHO05D007829 2.0e-07 59.7 71 40.8
CSS0027670 Camellia sinensis var. sinensis HOM05D002199 ORTHO05D007829 2.6e-07 59.3 107 31.8
DCAR_012390 Daucus carota HOM05D002199 ORTHO05D007829 2.6e-07 59.3 106 31.1
TPR.G34015 Trifolium pratense HOM05D002199 ORTHO05D007829 4.5e-07 58.5 71 39.4
Oeu011450.1 Olea europaea HOM05D002199 ORTHO05D007829 5.8e-07 58.2 107 31.8
Oeu011451.1 Olea europaea HOM05D002199 ORTHO05D007829 5.8e-07 58.2 107 31.8
arahy.Tifrunner.gnm1.ann1.Y4MBDE Arachis hypogaea HOM05D002199 ORTHO05D007829 7.6e-07 57.8 70 44.3
Ca_10349_v3 Cicer arietinum L. HOM05D002199 ORTHO05D007829 7.6e-07 57.8 96 34.4
Nn4g25822 Nelumbo nucifera HOM05D002199 ORTHO05D007829 7.6e-07 57.8 107 30.8
ECA248G0237 Erigeron canadensis HOM05D002199 ORTHO05D007829 1.3e-06 57.0 105 31.4
Nitab4.5_0005515g0020 Nicotiana tabacum HOM05D002199 ORTHO05D007829 1.3e-06 57.0 67 40.3
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.3e-06 57.0 105 30.5
Lj2C1191T9 Lonicera japonica HOM05D002199 ORTHO05D007829 2.2e-06 56.2 106 32.1
Nitab4.5_0013887g0020 Nicotiana tabacum HOM05D002199 ORTHO05D007829 2.2e-06 56.2 67 40.3
Phvul.007G144100 Phaseolus vulgaris HOM05D002199 ORTHO05D007829 2.2e-06 56.2 70 41.4
unitig_0.g1175 Utricularia gibba HOM05D002199 ORTHO05D007829 2.2e-06 56.2 65 40.0
CiPaw.08G096900 Carya illinoinensis HOM05D002199 ORTHO05D007829 2.9e-06 55.8 105 31.4
Psat6g165880 Pisum sativum HOM05D002199 ORTHO05D007829 2.9e-06 55.8 66 42.4
Hund05415 Selenicereus undatus HOM05D002199 ORTHO05D007829 2.9e-06 55.8 66 40.9
TAR365G1115 Trochodendron aralioides HOM05D002199 ORTHO05D007829 2.9e-06 55.8 106 32.1
Ciclev10018899m.g Citrus clementina HOM05D002199 ORTHO05D007829 3.8e-06 55.5 71 40.8
Migut.D00202 Erythranthe guttata HOM05D002199 ORTHO05D007829 3.8e-06 55.5 106 30.2
Lsat_1_v5_gn_5_190601 Lactuca sativa HOM05D002199 ORTHO05D007829 3.8e-06 55.5 112 30.4
Nitab4.5_0001756g0160 Nicotiana tabacum HOM05D002199 ORTHO05D007829 3.8e-06 55.5 68 38.2
Nitab4.5_0005515g0030 Nicotiana tabacum HOM05D002199 ORTHO05D007829 3.8e-06 55.5 68 39.7
Nitab4.5_0002469g0020 Nicotiana tabacum HOM05D002199 ORTHO05D007829 4.9e-06 55.1 107 29.9
Solyc09g074990.4 Solanum lycopersicum HOM05D002199 ORTHO05D007829 4.9e-06 55.1 107 28.0
Sopen09g029810 Solanum pennellii HOM05D002199 ORTHO05D007829 4.9e-06 55.1 107 28.0
CAN.G339.22 Capsicum annuum HOM05D002199 ORTHO05D007829 6.5e-06 54.7 106 29.2
AUR62033110 Chenopodium quinoa HOM05D002199 ORTHO05D007829 6.5e-06 54.7 70 41.4
ClCG09G005970 Citrullus lanatus HOM05D002199 ORTHO05D007829 6.5e-06 54.7 105 30.5
HanXRQChr13g0413191 Helianthus annuus HOM05D002199 ORTHO05D007829 6.5e-06 54.7 106 30.2
PSO832G1552 Papaver somniferum HOM05D002199 ORTHO05D007829 6.5e-06 54.7 106 30.2
SMO116G0380 Selaginella moellendorffii HOM05D002199 ORTHO05D007829 6.5e-06 54.7 98 33.7
EL10Ac1g01828 Beta vulgaris HOM05D002199 ORTHO05D007829 8.4e-06 54.3 106 32.1
Eucgr.K03466 Eucalyptus grandis HOM05D002199 ORTHO05D007829 8.4e-06 54.3 106 31.1
Glyma.02G155200 Glycine max HOM05D002199 ORTHO05D007829 8.4e-06 54.3 65 41.5
Lj5g0020775 Lotus japonicus HOM05D002199 ORTHO05D007829 8.4e-06 54.3 71 40.8
Peaxi162Scf00001ggene001 Petunia axillaris HOM05D002199 ORTHO05D007829 8.4e-06 54.3 67 37.3
VMungo0720G0513 Vigna mungo HOM05D002199 ORTHO05D007829 8.4e-06 54.3 70 40.0


User provided reference genes

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