Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.0e-302 1042.7 565 100.0
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 3.1e-195 685.6 570 67.9
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 4.4e-189 665.2 570 66.0
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 8.8e-182 641.0 533 68.9
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 4.2e-176 622.1 575 60.9
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 9.5e-176 620.9 580 63.3
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 2.1e-175 619.8 567 61.4
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 7.8e-170 601.3 653 55.9
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 8.0e-167 591.3 611 55.8
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.8e-166 590.1 582 58.4
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 3.4e-165 585.9 579 57.5
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.3e-164 583.9 571 59.7
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 1.3e-164 583.9 576 58.5
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 1.7e-164 583.6 579 60.1
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.7e-164 583.6 580 58.4
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 6.4e-164 581.6 572 59.1
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.1e-163 580.9 582 58.4
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 3.5e-162 575.9 562 58.0
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 1.0e-161 574.3 609 58.0
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 2.3e-161 573.2 567 60.7
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.3e-161 573.2 404 77.0
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.5e-160 570.5 581 61.3
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 9.5e-160 567.8 676 53.7
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 3.6e-159 565.8 591 55.0
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.5e-157 560.5 648 54.5
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 1.1e-155 554.3 578 58.7
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 1.4e-155 553.9 568 59.3
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 5.4e-155 552.0 568 55.1
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 7.0e-155 551.6 617 52.2
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.7e-154 549.7 503 60.8
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 7.8e-154 548.1 638 54.9
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 7.8e-154 548.1 663 51.9
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.7e-153 547.0 577 55.8
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 5.0e-153 545.4 527 58.6
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 5.0e-153 545.4 567 58.9
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.5e-152 543.1 583 54.0
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 9.5e-152 541.2 528 59.3
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 2.1e-151 540.0 629 54.4
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.3e-150 536.6 624 53.8
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 3.1e-150 536.2 612 53.8
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 3.1e-150 536.2 633 54.7
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 4.0e-150 535.8 629 53.7
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 2.6e-149 533.1 596 55.7
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 4.4e-149 532.3 597 55.1
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 7.5e-149 531.6 564 58.5
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.3e-148 530.8 626 52.7
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 4.9e-148 528.9 652 52.0
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 3.5e-146 522.7 673 49.9
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.3e-145 520.8 530 58.1
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 1.1e-144 517.7 412 72.1
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 1.1e-144 517.7 587 56.0
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 4.3e-144 515.8 639 50.4
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.7e-143 512.3 545 54.3
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 6.8e-142 508.4 538 57.1
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 8.9e-142 508.1 572 54.4
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 6.4e-140 501.9 499 59.5
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 2.4e-139 500.0 305 81.6
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 2.7e-138 496.5 610 50.7
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 4.6e-138 495.7 659 48.7
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 7.8e-138 495.0 360 73.3
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 1.5e-136 490.7 590 52.0
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.6e-135 487.3 555 53.5
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 2.1e-135 486.9 550 53.3
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 2.1e-135 486.9 550 53.3
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 3.6e-135 486.1 348 69.8
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 8.1e-135 485.0 609 50.7
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.8e-134 483.8 549 54.3
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 4.0e-134 482.6 555 53.9
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 4.0e-134 482.6 550 52.7
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 4.4e-133 479.2 405 63.7
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 4.4e-133 479.2 558 52.2
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 2.2e-132 476.9 555 51.5
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 2.2e-132 476.9 308 74.0
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 8.4e-132 474.9 304 74.3
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 1.4e-131 474.2 437 62.5
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 2.4e-131 473.4 521 53.4
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 4.2e-131 472.6 554 50.9
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 4.2e-131 472.6 623 48.6
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 5.4e-131 472.2 704 43.3
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 3.5e-130 469.5 562 52.7
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 4.6e-130 469.2 567 51.1
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 1.0e-129 468.0 483 56.5
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 1.9e-128 463.8 572 49.7
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 5.6e-128 462.2 548 49.3
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 7.1e-123 445.3 554 52.2
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.3e-121 441.0 276 75.7
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 7.4e-120 435.3 368 58.4
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 4.5e-117 426.0 617 45.7
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 9.9e-117 424.9 678 41.0
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 8.4e-116 421.8 396 57.6
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 6.2e-111 405.6 301 63.8
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 2.6e-109 400.2 559 48.3
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 7.6e-109 398.7 300 62.7
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 3.2e-107 393.3 463 48.4
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.2e-106 391.3 557 47.2
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.2e-106 391.3 483 48.9
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 6.0e-106 389.0 350 56.0
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.3e-105 387.9 350 61.1
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.5e-104 384.4 461 47.5
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.5e-104 384.4 461 47.5
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.2e-101 374.8 461 50.1
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 3.4e-101 373.2 420 50.2
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 5.9e-101 372.5 461 49.7
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 6.5e-100 369.0 383 55.4
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 8.5e-100 368.6 610 42.3
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 6.7e-97 359.0 635 40.0
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 5.7e-96 355.9 444 52.5
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.3e-87 328.2 542 41.7
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.8e-87 327.0 299 58.2
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.2e-85 321.6 360 54.4
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 8.8e-81 305.4 433 43.6
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 2.2e-79 300.8 327 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 2.4e-78 297.4 327 47.4
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 1.0e-76 292.0 345 44.1
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.5e-75 287.3 290 59.7
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 1.3e-71 275.0 240 67.9
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 2.2e-68 264.2 584 35.3
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.7e-55 221.5 263 47.5
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 7.5e-48 196.1 124 79.8
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 1.3e-44 185.3 379 33.2
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 4.3e-35 153.7 286 37.4
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 7.3e-35 152.9 321 35.8
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 3.4e-32 144.1 98 71.4
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 4.1e-30 137.1 186 43.0
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 8.9e-25 119.4 74 78.4
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 1.2e-24 119.0 113 56.6
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 3.6e-18 97.4 362 32.3
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.4e-17 95.5 62 67.7
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 3.2e-14 84.3 61 52.5
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 9.3e-14 82.8 65 56.9
Psat7g050000 Pisum sativum HOM05D005778 ORTHO05D007245 1.3e-10 72.4 99 41.4
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.8e-09 68.6 54 59.3
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 3.4e-08 64.3 46 73.9
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.3e-07 62.4 51 56.9


User provided reference genes

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