Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 0.0e+00 1872.4 935 100.0
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1227.6 963 66.4
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 0.0e+00 1203.0 930 66.3
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 0.0e+00 1191.4 960 64.5
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 0.0e+00 1177.9 961 63.6
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 0.0e+00 1156.7 962 62.8
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 0.0e+00 1156.0 971 62.3
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 0.0e+00 1143.3 958 62.5
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 0.0e+00 1134.0 959 61.4
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 0.0e+00 1130.5 958 60.6
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 0.0e+00 1128.6 936 62.5
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 0.0e+00 1126.7 974 59.9
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 0.0e+00 1122.5 961 61.2
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 0.0e+00 1122.1 965 60.2
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 0.0e+00 1114.4 945 60.5
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1113.6 962 60.1
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 0.0e+00 1106.7 960 60.8
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 0.0e+00 1105.1 956 60.3
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 0.0e+00 1099.7 960 60.7
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 0.0e+00 1090.1 956 59.6
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 0.0e+00 1089.3 953 59.1
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 0.0e+00 1085.9 962 59.1
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 0.0e+00 1080.5 968 59.2
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 0.0e+00 1078.5 958 59.8
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 0.0e+00 1076.2 967 60.0
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 6.4e-312 1074.7 953 59.0
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 6.4e-312 1073.5 975 57.8
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.5e-311 1071.2 974 57.7
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 1.7e-310 1069.3 947 59.5
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.1e-309 1065.1 992 57.0
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 4.8e-302 1041.2 955 58.0
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.1e-301 1040.0 953 58.2
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 6.6e-299 1030.8 955 57.4
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 8.6e-299 1030.4 956 56.6
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 8.6e-299 1030.4 948 56.8
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.2e-298 1028.1 1015 54.6
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 4.2e-298 1028.1 955 57.3
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.2e-297 1026.5 962 56.7
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.0e-296 1023.5 960 56.4
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 1.0e-296 1023.5 968 55.8
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.4e-296 1023.1 934 58.0
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 8.9e-296 1020.4 931 57.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 4.4e-295 1018.1 957 56.2
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 6.3e-294 1014.2 948 56.2
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 8.3e-294 1013.8 959 56.4
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 5.9e-292 1007.7 958 55.8
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.9e-290 1002.7 972 55.1
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.5e-290 1002.3 946 56.4
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 1.2e-289 1000.0 945 56.7
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.5e-287 993.0 950 56.0
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 2.6e-287 992.3 961 54.7
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 9.8e-287 990.3 957 55.2
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 3.2e-285 985.3 947 55.9
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.2e-284 983.4 959 55.0
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 4.6e-284 981.5 974 54.8
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 7.8e-284 980.7 954 55.8
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 2.3e-283 979.2 959 54.0
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.3e-278 963.4 960 53.5
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 1.4e-277 959.9 945 54.2
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 7.1e-277 957.6 956 53.9
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 1.3e-275 953.4 959 53.3
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.1e-274 950.3 995 52.6
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 3.3e-274 948.7 934 54.9
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 5.6e-274 948.0 936 54.1
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 1.7e-270 936.4 920 53.6
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 5.4e-269 931.4 937 56.1
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 3.9e-267 925.2 952 51.8
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 5.1e-267 924.9 863 57.9
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 4.7e-265 918.3 816 58.7
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.5e-263 913.3 965 52.4
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 6.2e-257 891.3 940 51.5
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.0e-255 886.3 824 57.5
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 3.4e-255 885.6 918 53.9
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.2e-252 877.1 816 58.8
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 5.3e-248 861.7 800 59.4
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 3.4e-247 859.0 957 49.7
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 9.3e-237 824.3 1001 47.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 9.3e-237 824.3 883 51.6
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.2e-236 823.9 981 47.5
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 3.3e-234 815.8 979 47.0
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 5.7e-234 815.1 981 47.2
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 4.1e-232 808.9 977 47.1
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 1.0e-230 804.3 981 47.8
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.2e-228 797.3 980 47.0
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 5.1e-227 792.0 981 46.4
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 3.6e-220 769.2 950 46.0
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 9.7e-218 761.1 733 55.0
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 2.2e-214 750.0 960 45.2
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.0e-214 748.8 914 47.8
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 6.5e-214 748.4 981 44.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.4e-211 740.7 574 65.9
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 1.8e-211 740.3 987 43.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.9e-211 739.2 574 65.7
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 1.1e-208 731.1 850 47.1
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.8e-208 730.3 642 60.3
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 3.1e-208 729.6 979 43.9
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 7.7e-207 724.9 980 43.9
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.0e-206 724.5 723 52.8
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 1.5e-205 720.7 986 43.7
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 6.3e-201 705.3 885 46.4
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 2.0e-199 700.3 905 46.2
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 1.3e-193 681.0 848 47.4
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 4.2e-189 666.0 1049 40.1
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.9e-185 652.5 766 48.8
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.6e-183 647.5 918 43.4
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 8.0e-180 635.2 674 51.2
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 3.5e-167 593.2 640 51.2
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 3.0e-166 590.1 643 51.3
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 5.0e-166 589.3 665 48.0
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.5e-165 587.0 652 48.5
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.8e-164 583.6 823 42.0
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.3e-153 548.1 780 42.3
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.8e-148 530.4 467 60.8
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 6.2e-148 529.3 937 36.7
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.9e-145 520.4 584 48.8
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 7.1e-144 515.8 1044 35.3
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-136 491.5 695 42.0
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 5.4e-136 489.6 697 41.3
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-134 485.3 520 50.0
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 1.5e-133 481.5 986 32.7
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 2.5e-133 480.7 856 35.7
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 2.2e-129 467.6 837 36.4
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 2.4e-123 447.6 359 63.8
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.8e-115 421.4 596 42.6
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 1.5e-114 418.3 595 42.9
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 8.5e-105 386.0 263 74.5
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 9.1e-99 365.9 265 66.4
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 7.4e-93 346.3 568 37.9
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 9.7e-93 345.9 531 41.6
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-78 299.3 401 46.9
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 7.0e-75 286.6 349 46.1
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 7.0e-75 286.6 272 53.7
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.2e-74 285.8 1170 25.5
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.7e-73 282.0 355 45.6
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.0e-67 260.0 213 60.1
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 4.3e-56 224.2 141 75.9
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.9e-51 208.8 275 45.8
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 6.0e-50 203.8 287 41.1
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-49 203.0 202 51.5
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 2.5e-48 198.4 230 47.4
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 8.9e-46 189.9 187 51.9
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 6.0e-42 177.2 142 62.7
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 4.6e-34 151.0 429 29.8
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 5.1e-33 147.5 149 57.0
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 1.9e-32 145.6 224 41.1
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 2.1e-31 142.1 152 52.6
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 3.8e-28 131.3 118 55.9
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 3.5e-26 124.8 214 35.0
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 1.7e-25 122.5 92 65.2
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.1e-24 119.8 105 59.0
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 9.6e-24 116.7 84 66.7
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-21 109.8 131 43.5
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 3.2e-19 101.7 155 38.1
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 7.1e-19 100.5 78 64.1
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 2.7e-18 98.6 155 37.4
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 2.7e-18 98.6 105 54.3
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 6.7e-17 94.0 369 26.8
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 8.1e-15 87.0 104 43.3
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 3.1e-14 85.1 67 58.2
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 4.5e-13 81.3 89 48.3
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 9.9e-13 80.1 89 47.2
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 9.9e-13 80.1 89 47.2
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 9.9e-13 80.1 89 47.2
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 9.9e-13 80.1 89 47.2
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 2.9e-12 78.6 89 46.1
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 1.2e-10 73.2 81 48.1
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 2.1e-10 72.4 103 37.9
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 3.5e-10 71.6 229 29.7
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 1.1e-08 66.6 83 42.2
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 1.1e-08 66.6 83 42.2
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 9.6e-08 63.5 103 38.8
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 8.2e-07 60.5 106 34.9


User provided reference genes

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