Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 5.6e-234 813.9 414 100.0
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.1e-204 715.7 414 85.3
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 1.0e-203 713.4 412 87.1
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.4e-200 703.0 414 85.0
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 4.5e-199 698.0 414 84.8
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 9.9e-199 696.8 414 85.0
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 9.9e-199 696.8 414 83.6
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 8.4e-198 693.7 414 84.3
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.4e-197 692.2 414 83.6
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 7.1e-197 690.6 414 84.3
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 9.3e-197 690.3 414 82.9
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.2e-196 689.9 414 83.1
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.2e-196 689.9 414 83.6
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 2.7e-196 688.7 414 83.8
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 6.0e-196 687.6 413 83.1
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.0e-195 686.8 409 83.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.3e-195 686.4 414 83.6
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 1.8e-195 686.0 414 83.6
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 2.3e-195 685.6 412 83.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 6.7e-195 684.1 414 81.6
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.5e-194 682.9 414 82.6
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 3.3e-194 681.8 445 78.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.3e-193 679.9 410 83.7
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 81.4
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 1.6e-193 679.5 414 81.4
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 6.2e-193 677.6 414 82.4
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.1e-192 676.8 416 82.2
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 3.1e-192 675.2 413 81.6
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 1.2e-191 673.3 409 81.9
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 1.2e-191 673.3 409 83.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.5e-191 672.9 414 81.6
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.5e-191 672.9 414 82.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 2.0e-191 672.5 414 82.1
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.0e-191 672.5 414 82.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 2.6e-191 672.2 414 81.9
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.4e-191 671.8 414 79.7
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 4.5e-191 671.4 411 82.7
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 4.5e-191 671.4 414 79.5
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 7.6e-191 670.6 413 81.4
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-190 669.8 414 81.4
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.3e-190 669.8 413 80.9
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.9e-190 667.9 414 79.2
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-189 666.8 414 79.2
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.9e-189 666.0 413 81.8
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 5.5e-189 664.5 414 81.2
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 7.1e-189 664.1 413 79.9
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.7e-188 662.1 413 79.9
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 4.6e-188 661.4 411 80.8
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 1.8e-187 659.4 414 80.4
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.3e-187 659.1 413 80.1
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.9e-187 658.3 415 80.7
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 5.1e-187 657.9 411 80.0
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 3.3e-186 655.2 416 80.3
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.3e-186 654.8 415 79.8
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 1.6e-185 652.9 415 79.8
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 4.8e-185 651.4 413 79.7
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 5.3e-184 647.9 414 78.5
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.2e-183 646.7 410 79.8
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.2e-183 646.7 414 78.5
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.5e-183 646.4 414 78.3
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 2.0e-183 646.0 414 78.0
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 2.0e-183 646.0 414 78.0
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.4e-183 645.2 414 78.3
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.0e-182 643.7 414 77.8
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 1.7e-182 642.9 414 78.0
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.0e-182 641.3 415 78.1
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 6.5e-182 641.0 415 79.0
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.1e-181 640.2 414 77.3
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 1.4e-181 639.8 414 77.8
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.9e-181 639.4 414 77.3
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.5e-181 639.0 414 77.3
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 5.5e-181 637.9 413 76.5
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 7.2e-181 637.5 414 80.0
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 9.3e-181 637.1 413 77.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.6e-180 636.3 413 76.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 2.7e-180 635.6 411 76.6
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 3.5e-180 635.2 426 75.8
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 3.5e-180 635.2 426 76.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 3.5e-180 635.2 426 76.1
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.0e-179 633.6 414 76.6
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.3e-179 632.5 420 76.4
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.7e-179 630.9 411 76.4
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 8.7e-179 630.6 420 76.0
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.3e-177 626.7 414 75.1
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 4.8e-177 624.8 413 72.6
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.4e-176 622.5 438 72.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 4.5e-175 618.2 429 73.0
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.7e-174 616.3 414 75.8
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 6.7e-171 604.4 371 81.9
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.5e-170 603.2 375 80.8
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.1e-168 595.1 406 76.1
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 5.9e-167 591.3 416 72.6
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 6.5e-166 587.8 410 72.2
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.2e-164 583.6 414 72.9
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 4.7e-164 581.6 410 72.9
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 8.2e-161 570.9 410 68.5
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 5.5e-157 558.1 371 77.1
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 2.7e-156 555.8 412 69.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 3.0e-155 552.4 316 87.3
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.3e-153 547.0 485 63.1
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.6e-151 540.0 397 66.0
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 3.8e-150 535.4 418 66.5
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.0e-147 525.4 411 66.7
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.7e-145 518.8 399 62.4
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 2.4e-144 516.2 412 62.6
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.8e-136 490.0 294 83.0
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.1e-136 489.2 294 83.0
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.2e-132 477.2 296 79.4
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 1.0e-131 474.2 305 76.4
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.3e-125 452.2 257 87.9
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 7.0e-120 434.9 285 77.2
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 6.0e-119 431.8 314 71.3
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 7.3e-117 424.9 256 82.0
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.4e-105 385.2 313 63.9
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 6.9e-99 365.2 292 68.8
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 7.6e-98 361.7 409 46.5
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 2.9e-97 359.8 284 64.8
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.2e-88 329.3 191 87.4
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.3e-78 297.7 238 64.7
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 5.1e-78 295.8 205 72.2
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 5.3e-75 285.8 184 75.0
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.3e-70 270.4 173 77.5
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 5.1e-70 269.2 199 67.3
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.8e-68 263.5 402 37.6
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.6e-63 246.1 204 64.7
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 5.3e-59 232.6 321 37.7
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 9.1e-59 231.9 131 88.5
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 7.7e-58 228.8 408 35.0
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.4e-54 218.0 220 54.5
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-48 196.8 126 76.2
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 7.9e-47 192.2 121 74.4
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.4e-45 185.7 199 56.3
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.5e-41 172.2 161 58.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-40 170.2 170 55.3
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 2.1e-39 167.5 102 77.5
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 2.7e-39 167.2 414 32.1
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 1.5e-37 161.4 107 71.0
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.4e-35 154.1 114 70.2
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-32 144.1 83 81.9
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 8.0e-31 139.0 76 86.8
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.1e-27 128.6 117 61.5
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 6.3e-20 102.8 101 58.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 3.5e-18 97.1 156 44.2
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.9e-18 96.3 51 90.2
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 7.8e-18 95.9 114 54.4
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.9e-16 91.3 158 37.3
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 2.1e-15 87.8 146 43.8
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 2.6e-13 80.9 54 81.5
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.9e-12 77.4 51 72.5
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.0e-11 72.8 71 59.2
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 6.6e-09 66.2 55 63.6
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 6.6e-09 66.2 38 84.2
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 4.3e-08 63.5 100 40.0


User provided reference genes

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