Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 2.6e-186 655.2 319 100.0
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 3.7e-129 465.3 321 70.7
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 2.1e-124 449.5 321 66.4
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 6.8e-123 444.5 323 68.4
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 2.0e-122 443.0 312 67.3
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 2.6e-122 442.6 319 69.3
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 5.8e-122 441.4 314 69.4
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 1.1e-120 437.2 320 68.8
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.4e-120 436.8 320 65.0
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.4e-120 436.0 320 65.0
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.2e-114 417.2 317 63.1
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 2.0e-114 416.4 315 62.9
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.2e-113 412.9 323 65.0
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 2.9e-113 412.5 312 66.0
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.1e-112 410.6 315 61.9
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.1e-112 410.6 309 64.7
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 1.9e-112 409.8 316 66.1
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 5.4e-112 408.3 314 62.7
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 9.3e-112 407.5 293 66.2
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 1.6e-111 406.8 315 62.9
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.7e-110 403.3 377 56.0
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 3.9e-110 402.1 314 62.4
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.1e-109 400.6 315 63.2
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.6e-108 396.7 300 63.3
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.1e-108 396.4 238 76.9
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 2.1e-108 396.4 320 60.3
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 2.8e-108 396.0 328 60.4
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 3.6e-108 395.6 315 60.6
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 4.8e-108 395.2 312 64.1
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 6.2e-108 394.8 328 60.1
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 8.1e-108 394.4 305 61.3
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.8e-107 393.3 314 62.1
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 3.1e-107 392.5 319 60.5
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 3.1e-107 392.5 328 60.1
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 6.9e-107 391.3 314 61.8
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.2e-106 390.6 322 60.9
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.5e-106 390.2 329 60.8
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 3.4e-106 389.0 315 61.9
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 1.4e-104 383.6 312 61.5
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.9e-104 383.3 300 61.3
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.9e-104 383.3 321 61.1
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 4.2e-104 382.1 317 61.2
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 4.2e-104 382.1 315 61.6
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 5.4e-104 381.7 324 59.6
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.4e-104 381.7 304 62.5
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.3e-104 380.9 315 61.6
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 2.7e-103 379.4 323 61.6
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 4.6e-103 378.6 290 60.0
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 4.6e-103 378.6 330 56.1
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.6e-103 378.6 328 59.1
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 6.0e-103 378.3 323 59.4
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.3e-102 377.1 315 60.3
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.8e-102 376.7 315 61.0
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 3.0e-102 375.9 323 59.4
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 5.1e-102 375.2 353 54.4
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 8.7e-102 374.4 272 65.1
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 8.7e-102 374.4 316 57.0
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.1e-101 374.0 322 59.3
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.5e-101 373.6 316 58.9
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 2.5e-101 372.9 306 62.7
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 3.3e-101 372.5 291 62.5
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 5.6e-101 371.7 322 58.7
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 9.6e-101 370.9 319 58.3
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 9.6e-101 370.9 318 59.1
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 9.6e-101 370.9 318 59.1
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 9.6e-101 370.9 319 57.7
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.3e-100 370.5 315 58.7
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 2.1e-100 369.8 316 59.2
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.8e-100 369.4 276 64.1
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 6.2e-100 368.2 271 65.3
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.8e-99 366.7 269 65.1
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 3.1e-99 365.9 323 58.5
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 3.1e-99 365.9 323 58.5
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 5.3e-99 365.2 318 58.2
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.2e-98 364.0 318 58.2
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 1.5e-98 363.6 211 79.1
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 3.4e-98 362.5 321 57.9
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 5.8e-98 361.7 321 57.9
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 1.7e-97 360.1 323 58.8
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 2.2e-97 359.8 269 65.1
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 2.2e-97 359.8 270 64.4
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 2.2e-97 359.8 340 55.3
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 2.9e-97 359.4 289 58.1
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 3.8e-97 359.0 346 54.3
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.1e-96 357.5 262 63.7
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 1.9e-96 356.7 250 69.2
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 5.5e-96 355.1 267 64.0
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 9.3e-96 354.4 269 61.0
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 9.3e-96 354.4 282 59.6
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.2e-95 354.0 372 50.8
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 2.7e-95 352.8 323 57.0
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 6.0e-95 351.7 347 52.7
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 1.0e-94 350.9 269 60.2
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.8e-94 350.1 332 55.1
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 3.0e-94 349.4 301 57.5
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 6.7e-94 348.2 321 53.9
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 4.3e-93 345.5 338 53.3
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.8e-92 342.8 327 55.4
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 2.8e-92 342.8 275 58.9
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 6.2e-92 341.7 357 51.0
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.1e-91 340.9 236 68.6
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 9.0e-91 337.8 279 58.4
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 9.0e-91 337.8 279 58.4
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.3e-89 334.0 311 54.7
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 3.5e-87 325.9 214 70.6
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 7.9e-87 324.7 238 61.3
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 8.7e-86 321.2 312 52.9
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.5e-80 303.1 211 67.8
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.4e-72 277.3 326 49.4
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 2.1e-71 273.5 221 63.8
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.3e-65 254.2 299 45.8
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 8.5e-65 251.5 219 55.7
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.5e-64 250.8 297 47.1
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 5.5e-64 248.8 247 53.8
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 7.2e-64 248.4 238 55.0
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.7e-60 237.3 240 52.9
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 2.7e-58 229.9 364 36.5
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 5.9e-58 228.8 243 51.9
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 9.4e-56 221.5 207 56.5
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 6.8e-54 215.3 192 56.2
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 8.3e-52 208.4 394 36.0
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 8.3e-52 208.4 232 44.0
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.7e-49 200.7 310 37.1
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 8.5e-49 198.4 217 51.6
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 2.6e-45 186.8 240 45.8
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 5.4e-43 179.1 195 51.3
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 7.0e-43 178.7 315 39.0
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 2.0e-42 177.2 228 38.2
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 2.7e-42 176.8 201 43.3
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 5.2e-38 162.5 111 64.0
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.5e-37 161.0 202 44.6
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.2e-35 153.3 110 66.4
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 5.4e-35 152.5 160 51.2
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 4.7e-31 139.4 164 45.7
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 4.1e-27 126.3 291 32.0
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.6e-23 113.2 101 55.4
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 1.3e-17 94.7 195 32.3
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 2.4e-11 73.9 45 66.7
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 3.2e-11 73.6 188 28.7
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 7.1e-11 72.4 63 52.4


User provided reference genes

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