Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G1292 Trochodendron aralioides HOM05D005508 ORTHO05D006882 1.8e-176 622.5 305 100.0
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 3.6e-113 412.1 261 79.7
Nn4g23404 Nelumbo nucifera HOM05D005508 ORTHO05D006882 4.4e-103 378.6 268 70.1
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 7.0e-101 371.3 257 70.4
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 2.0e-100 369.8 257 70.0
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 6.0e-100 368.2 261 69.7
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 2.8e-97 359.4 267 66.3
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 8.9e-96 354.4 264 65.2
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 9.8e-95 350.9 263 66.2
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 2.9e-94 349.4 268 64.2
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 1.4e-93 347.1 262 64.5
Cfa007661 Carpinus fangiana HOM05D005508 ORTHO05D006882 7.1e-93 344.7 257 67.3
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 3.5e-92 342.4 260 64.6
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 3.0e-91 339.3 258 63.6
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 3.9e-91 339.0 265 63.0
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 6.6e-91 338.2 252 65.9
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 6.6e-91 338.2 264 62.5
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 6.6e-91 338.2 259 64.5
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 8.6e-91 337.8 264 62.1
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 1.5e-90 337.0 293 60.1
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 1.9e-90 336.7 311 56.3
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 2.5e-90 336.3 261 65.1
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 3.3e-90 335.9 261 65.5
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 5.6e-90 335.1 256 65.2
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 5.6e-90 335.1 265 64.2
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 5.6e-90 335.1 264 63.3
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 5.6e-90 335.1 258 64.3
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 9.5e-90 334.3 261 64.0
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 9.5e-90 334.3 261 65.1
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 1.2e-89 334.0 260 60.8
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 1.6e-89 333.6 261 61.7
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 1.6e-89 333.6 256 62.9
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 2.1e-89 333.2 256 63.7
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 6.2e-89 331.6 261 63.6
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 1.4e-88 330.5 279 59.5
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 2.3e-88 329.7 248 63.3
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 2.3e-88 329.7 253 65.2
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 2.3e-88 329.7 261 63.2
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 3.1e-88 329.3 248 63.3
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 3.1e-88 329.3 248 63.3
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 3.1e-88 329.3 248 63.3
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 3.1e-88 329.3 289 56.1
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 5.2e-88 328.6 262 65.3
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 5.2e-88 328.6 259 64.5
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 7.6e-87 324.7 249 61.8
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 2.2e-86 323.2 258 61.2
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 6.4e-86 321.6 258 60.1
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 1.1e-85 320.9 276 56.9
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 3.2e-85 319.3 258 60.1
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 5.4e-85 318.5 261 59.8
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 1.6e-84 317.0 279 57.3
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 2.1e-84 316.6 279 57.7
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 2.1e-84 316.6 279 58.1
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 4.6e-84 315.5 248 62.5
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 6.0e-84 315.1 279 57.3
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 6.0e-84 315.1 279 57.0
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 7.8e-84 314.7 259 61.8
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 7.8e-84 314.7 247 60.3
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 1.0e-83 314.3 258 57.8
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 1.0e-83 314.3 279 55.9
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 1.0e-83 314.3 257 60.3
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 1.0e-83 314.3 254 59.4
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 2.3e-83 313.2 252 61.5
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 2.3e-83 313.2 286 54.9
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 6.6e-83 311.6 257 59.9
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 1.5e-82 310.5 258 56.6
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 5.6e-82 308.5 256 55.9
Lsat_1_v5_gn_5_138080 Lactuca sativa HOM05D005508 ORTHO05D006882 5.6e-82 308.5 255 62.4
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 7.3e-82 308.1 246 60.6
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 2.1e-81 306.6 279 56.3
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 2.8e-81 306.2 280 56.1
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 6.2e-81 305.1 252 57.5
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 6.2e-81 305.1 279 54.5
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 8.1e-81 304.7 249 59.8
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 1.1e-80 304.3 254 63.0
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 1.2e-79 300.8 248 62.5
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 1.2e-79 300.8 255 57.3
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 1.5e-79 300.4 280 55.0
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 5.8e-79 298.5 262 61.1
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 1.3e-78 297.4 259 59.8
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 2.2e-78 296.6 227 67.8
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 4.2e-77 292.4 253 56.5
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 5.4e-77 292.0 251 55.4
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 1.2e-76 290.8 267 53.6
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 2.1e-76 290.0 258 58.9
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 2.7e-76 289.7 262 55.7
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 1.7e-75 287.0 255 59.2
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 3.3e-74 282.7 204 68.1
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 4.3e-74 282.3 247 58.7
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 7.3e-74 281.6 253 56.1
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 2.1e-73 280.0 256 55.1
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 3.6e-73 279.3 321 48.3
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 1.4e-72 277.3 246 56.5
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 5.3e-72 275.4 260 54.6
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 6.9e-72 275.0 246 56.1
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 6.9e-72 275.0 247 56.7
FAN02G1587 Fragaria x ananassa HOM05D005508 ORTHO05D010430 6.9e-72 275.0 247 56.7
FAN14G5804 Fragaria x ananassa HOM05D005508 ORTHO05D010430 6.9e-72 275.0 247 56.7
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 1.5e-71 273.9 264 51.1
HPP92_025853 Vanilla planifolia HOM05D005508 ORTHO05D006882 3.4e-71 272.7 259 56.8
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 1.7e-70 270.4 256 53.9
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 8.4e-70 268.1 298 48.3
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 4.2e-69 265.8 297 47.5
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 3.5e-68 262.7 165 77.6
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 1.0e-67 261.2 217 58.5
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 1.6e-65 253.8 281 49.1
TPR.G17852 Trifolium pratense HOM05D005508 ORTHO05D006882 1.4e-64 250.8 214 58.4
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 5.3e-64 248.8 266 47.7
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 3.4e-63 246.1 254 52.0
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 8.7e-59 231.5 243 51.0
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 9.0e-56 221.5 165 64.2
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 1.2e-55 221.1 256 47.7
C02p07790 Brassica napus HOM05D005508 ORTHO05D006882 1.1e-53 214.5 190 57.4
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 1.3e-49 201.1 252 47.6
SMO172G0157 Selaginella moellendorffii HOM05D005508 ORTHO05D006882 3.8e-46 189.5 241 41.9
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 1.1e-45 188.0 254 40.2
TWI34G1701 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 7.7e-39 165.2 126 66.7
CBR_g18642 Chara braunii HOM05D005508 ORTHO05D006882 5.0e-38 162.5 264 38.6
Lj2g0016184 Lotus japonicus HOM05D005508 ORTHO05D006882 3.7e-33 146.4 180 44.4
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 1.4e-32 144.4 273 35.2
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 2.2e-30 137.1 240 37.1
PRCOL_00003700 Prasinoderma coloniale HOM05D005508 ORTHO05D006882 2.6e-26 123.6 225 34.2
BraA08t32798Z Brassica rapa HOM05D005508 ORTHO05D006882 7.7e-15 85.5 85 51.8
AUR62014946 Chenopodium quinoa HOM05D005508 ORTHO05D006882 2.7e-12 77.0 163 31.9
SHI29392 Sapria himalayana HOM05D005508 ORTHO05D006882 3.0e-11 73.6 70 57.1
SGA_v2.0_scaffold113G31696 Striga asiatica HOM05D005508 ORTHO05D006882 1.4e-08 64.7 136 30.9
Lalb_Chr12g0201371 Lupinus albus HOM05D000453 ORTHO05D000387 1.3e-06 58.2 129 31.8
Ca_21881_v3 Cicer arietinum L. HOM05D000453 ORTHO05D000387 2.3e-06 57.4 134 32.8
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 2.9e-06 57.0 126 27.0
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 2.9e-06 57.0 126 27.8
Medtr4g106480 Medicago truncatula HOM05D000453 ORTHO05D000387 2.9e-06 57.0 141 31.9
TPR.G37519 Trifolium pratense HOM05D000453 ORTHO05D000387 2.9e-06 57.0 135 30.4


User provided reference genes

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