Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0908 Trochodendron aralioides HOM05D000824 ORTHO05D003555 2.6e-115 418.7 203 100.0
TAR629G1891 Trochodendron aralioides HOM05D000824 ORTHO05D000065 2.3e-31 139.8 271 28.8
TAR371G0114 Trochodendron aralioides HOM05D000824 ORTHO05D003555 2.8e-21 106.3 149 36.2
Migut.I00367 Erythranthe guttata HOM05D000824 ORTHO05D003555 2.2e-13 80.1 149 30.9
MD06G1225500 Malus domestica HOM05D000824 ORTHO05D003555 2.2e-13 80.1 149 31.5
RcHm_v2.0_Chr7g0183161 Rosa chinensis HOM05D000824 ORTHO05D003555 6.3e-13 78.6 148 27.7
FAN13G2002 Fragaria x ananassa HOM05D000824 ORTHO05D003555 1.4e-12 77.4 147 26.5
MSTRG.22957 Avicennia marina HOM05D000824 ORTHO05D003555 3.1e-12 76.3 146 28.8
FAN18G4284 Fragaria x ananassa HOM05D000824 ORTHO05D003555 5.3e-12 75.5 147 26.5
MD14G1212400 Malus domestica HOM05D000824 ORTHO05D003555 9.1e-12 74.7 149 30.9
SGA_v2.0_scaffold25G10955 Striga asiatica HOM05D000824 ORTHO05D003555 9.1e-12 74.7 148 27.0
FAN08G1674 Fragaria x ananassa HOM05D000824 ORTHO05D003555 1.5e-11 73.9 147 25.9
SGA_v2.0_scaffold28G11745 Striga asiatica HOM05D000824 ORTHO05D003555 1.5e-11 73.9 148 28.4
Os03g0214100 Oryza sativa ssp. japonica HOM05D000824 ORTHO05D003555 2.6e-11 73.2 146 28.1
TPR.G2021 Trifolium pratense HOM05D000824 ORTHO05D003555 2.6e-11 73.2 148 27.7
Peaxi162Scf00201g00330 Petunia axillaris HOM05D000824 ORTHO05D003555 4.5e-11 72.4 151 28.5
AL6G18370 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 5.9e-11 72.0 140 26.4
Prupe.5G205700 Prunus persica HOM05D000824 ORTHO05D003555 5.9e-11 72.0 148 26.4
AUR62008537 Chenopodium quinoa HOM05D000824 ORTHO05D003555 7.7e-11 71.6 148 28.4
CsaV3_1G002970 Cucumis sativus L. HOM05D000824 ORTHO05D003555 7.7e-11 71.6 172 28.5
Medtr4g109580 Medicago truncatula HOM05D000824 ORTHO05D003555 7.7e-11 71.6 148 24.3
Zm00001eb400180 Zea mays HOM05D000824 ORTHO05D003555 7.7e-11 71.6 147 26.5
MSTRG.11337 Avicennia marina HOM05D000824 ORTHO05D003555 1.0e-10 71.2 148 27.0
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 1.0e-10 71.2 149 26.8
AUR62021554 Chenopodium quinoa HOM05D000824 ORTHO05D003555 1.0e-10 71.2 148 28.4
Ca_21770_v3 Cicer arietinum L. HOM05D000824 ORTHO05D003555 1.0e-10 71.2 148 25.0
Cc00_g07660 Coffea canephora HOM05D000824 ORTHO05D003555 1.0e-10 71.2 148 25.7
Sed0027547 Sechium edule HOM05D000824 ORTHO05D003555 1.0e-10 71.2 172 27.3
SEGI_23554 Sequoiadendron giganteum HOM05D000824 ORTHO05D003555 1.0e-10 71.2 148 27.0
AT5G08020 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 1.3e-10 70.9 146 25.3
COL.COLO4_06851 Corchorus olitorius HOM05D000824 ORTHO05D003555 1.3e-10 70.9 148 27.0
Nitab4.5_0009401g0060 Nicotiana tabacum HOM05D000824 ORTHO05D003555 1.3e-10 70.9 151 27.8
Psat4g047800 Pisum sativum HOM05D000824 ORTHO05D003555 1.3e-10 70.9 146 24.0
CAN.G1228.20 Capsicum annuum HOM05D000824 ORTHO05D003555 1.7e-10 70.5 151 27.2
Haze_07734 Corylus avellana HOM05D000824 ORTHO05D003555 1.7e-10 70.5 151 26.5
Glyma.05G020600 Glycine max HOM05D000824 ORTHO05D003555 1.7e-10 70.5 153 27.5
Hma1.2p1_0060F.1_g033050 Hydrangea macrophylla HOM05D000824 ORTHO05D003555 1.7e-10 70.5 149 27.5
Lj9C471T8 Lonicera japonica HOM05D000824 ORTHO05D003555 1.7e-10 70.5 146 26.7
GSVIVG01007849001 Vitis vinifera HOM05D000824 ORTHO05D003555 1.7e-10 70.5 148 27.0
CSS0009813 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 2.2e-10 70.1 148 26.4
CANSAT80G1236 Cannabis sativa HOM05D000824 ORTHO05D003555 2.2e-10 70.1 149 27.5
CiPaw.11G054100 Carya illinoinensis HOM05D000824 ORTHO05D003555 2.2e-10 70.1 151 27.8
Ciclev10019317m.g Citrus clementina HOM05D000824 ORTHO05D003555 2.2e-10 70.1 151 27.2
Sed0022878 Sechium edule HOM05D000824 ORTHO05D003555 2.2e-10 70.1 148 26.4
Atru.chr9.564 Acer truncatum HOM05D000824 ORTHO05D003555 2.9e-10 69.7 153 26.8
Aa31LG3G18510 Aethionema arabicum HOM05D000824 ORTHO05D003555 2.9e-10 69.7 138 26.1
MELO3C017228.2 Cucumis melo HOM05D000824 ORTHO05D003555 2.9e-10 69.7 171 26.9
Nn4g23436 Nelumbo nucifera HOM05D000824 ORTHO05D003555 2.9e-10 69.7 149 26.8
QL10p019699 Quercus lobata HOM05D000824 ORTHO05D003555 2.9e-10 69.7 151 27.2
Rhsim08G0145600 Rhododendron simsii HOM05D000824 ORTHO05D003555 2.9e-10 69.7 148 27.0
vmacro17614 Vaccinium macrocarpon HOM05D000824 ORTHO05D003555 2.9e-10 69.7 148 27.7
Ah.11g047720 Amaranthus hybridus HOM05D000824 ORTHO05D003555 3.8e-10 69.3 145 27.6
Lj5A102T96 Lonicera japonica HOM05D000824 ORTHO05D003555 3.8e-10 69.3 146 28.1
Zm00001eb282530 Zea mays HOM05D000824 ORTHO05D003555 3.8e-10 69.3 147 25.2
CSS0043196 Camellia sinensis var. sinensis HOM05D000824 ORTHO05D003555 5.0e-10 68.9 151 26.5
Carub.0006s0691 Capsella rubella HOM05D000824 ORTHO05D003555 5.0e-10 68.9 140 25.0
PGSC0003DMG400024634 Solanum tuberosum HOM05D000824 ORTHO05D003555 5.0e-10 68.9 151 27.2
TAR371G0671 Trochodendron aralioides HOM05D000824 ORTHO05D003555 5.0e-10 68.9 150 26.7
BcaB01g05683 Brassica carinata HOM05D000824 ORTHO05D003555 6.5e-10 68.6 140 27.1
BolC3t12936H Brassica oleracea HOM05D000824 ORTHO05D003555 6.5e-10 68.6 142 26.8
CARHR205160 Cardamine hirsuta HOM05D000824 ORTHO05D003555 6.5e-10 68.6 141 27.0
CARHR274710 Cardamine hirsuta HOM05D000824 ORTHO05D003555 6.5e-10 68.6 150 26.7
Oeu044875.1 Olea europaea HOM05D000824 ORTHO05D003555 6.5e-10 68.6 148 25.7
PGR083G2843 Punica granatum HOM05D000824 ORTHO05D003555 6.5e-10 68.6 148 25.7
QL93p0160_0016 Quercus lobata HOM05D002907 ORTHO05D000065 6.5e-10 68.6 210 23.8
AL8G37660 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 8.5e-10 68.2 149 26.8
AT5G61000 Arabidopsis thaliana HOM05D000824 ORTHO05D003555 8.5e-10 68.2 149 26.8
EL10Ac5g11138 Beta vulgaris HOM05D000824 ORTHO05D003555 8.5e-10 68.2 148 27.0
Lalb_Chr12g0197221 Lupinus albus HOM05D000824 ORTHO05D003555 1.1e-09 67.8 151 25.2
PSO017G4603 Papaver somniferum HOM05D000824 ORTHO05D003555 1.1e-09 67.8 150 29.3
Hund09917 Selenicereus undatus HOM05D000824 ORTHO05D003555 1.1e-09 67.8 149 27.5
Sc04g0004360 Simmondsia chinensis HOM05D000824 ORTHO05D003555 1.1e-09 67.8 151 27.2
THA.LOC104804633 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 1.1e-09 67.8 152 28.3
Hund02583 Selenicereus undatus HOM05D000824 ORTHO05D003555 1.4e-09 67.4 149 26.8
Sopen03g034120 Solanum pennellii HOM05D000824 ORTHO05D003555 1.4e-09 67.4 149 27.5
Thecc.03G102500 Theobroma cacao HOM05D000824 ORTHO05D003555 1.4e-09 67.4 147 26.5
HPP92_014050 Vanilla planifolia HOM05D000824 ORTHO05D003555 1.4e-09 67.4 149 26.8
Glyma.17G078700 Glycine max HOM05D000824 ORTHO05D003555 1.9e-09 67.0 148 25.0
Manes.06G084200 Manihot esculenta HOM05D000824 ORTHO05D003555 1.9e-09 67.0 149 27.5
Solyc03g115050.3 Solanum lycopersicum HOM05D000824 ORTHO05D003555 1.9e-09 67.0 149 27.5
TAR636G3595 Trochodendron aralioides HOM05D004956 ORTHO05D006284 1.9e-09 67.0 66 47.0
A03p46710 Brassica napus HOM05D000824 ORTHO05D003555 2.5e-09 66.6 139 23.7
BraA03t13794Z Brassica rapa HOM05D000824 ORTHO05D003555 2.5e-09 66.6 139 23.7
Nitab4.5_0001485g0110 Nicotiana tabacum HOM05D000824 ORTHO05D003555 2.5e-09 66.6 150 28.0
BraA03t09704Z Brassica rapa HOM05D000824 ORTHO05D003555 3.2e-09 66.2 142 26.1
Thhalv10013014m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 3.2e-09 66.2 146 24.7
FvH4_5g13771 Fragaria vesca HOM05D000824 ORTHO05D003555 3.2e-09 66.2 117 28.2
TAR629G0759 Trochodendron aralioides HOM05D000824 ORTHO05D003555 3.2e-09 66.2 154 27.3
BcaB01g05642 Brassica carinata HOM05D000824 ORTHO05D003555 4.2e-09 65.9 142 26.1
BcaNung06900 Brassica carinata HOM05D000824 ORTHO05D003555 4.2e-09 65.9 148 23.0
C03p03990 Brassica napus HOM05D000824 ORTHO05D003555 4.2e-09 65.9 142 26.1
Carub.0008s2169 Capsella rubella HOM05D000824 ORTHO05D003555 4.2e-09 65.9 149 26.2
Mapoly0109s0044 Marchantia polymorpha HOM05D000824 ORTHO05D003555 4.2e-09 65.9 153 26.1
TAR063G0004 Trochodendron aralioides HOM05D000824 ORTHO05D010357 4.2e-09 65.9 52 55.8
TAR091G0002 Trochodendron aralioides HOM05D000824 ORTHO05D000001 4.2e-09 65.9 52 55.8
A03p03540 Brassica napus HOM05D000824 ORTHO05D003555 5.5e-09 65.5 142 26.1
DCAR_023168 Daucus carota HOM05D000824 ORTHO05D003555 5.5e-09 65.5 146 25.3
Gohir.A03G070300 Gossypium hirsutum HOM05D000824 ORTHO05D003555 5.5e-09 65.5 151 25.8
Gohir.D03G096700 Gossypium hirsutum HOM05D000824 ORTHO05D003555 5.5e-09 65.5 151 25.8
Pp3c1_20770 Physcomitrium patens HOM05D000824 ORTHO05D003555 5.5e-09 65.5 150 23.3
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 5.5e-09 65.5 151 25.8
THA.LOC104819400 Tarenaya hassleriana HOM05D000824 ORTHO05D003555 5.5e-09 65.5 151 26.5
Zm00001eb008630 Zea mays HOM05D000824 ORTHO05D003555 5.5e-09 65.5 147 24.5
Cpa.g.sc1086.1 Carica papaya HOM05D000824 ORTHO05D003555 7.2e-09 65.1 148 25.7
Lsat_1_v5_gn_1_14461 Lactuca sativa HOM05D000824 ORTHO05D003555 7.2e-09 65.1 138 27.5
PSO478G2603 Papaver somniferum HOM05D000824 ORTHO05D003555 7.2e-09 65.1 146 26.0
Potri.015G057300 Populus trichocarpa HOM05D000824 ORTHO05D003555 7.2e-09 65.1 151 26.5
Gorai.003G101500 Gossypium raimondii HOM05D000824 ORTHO05D003555 9.4e-09 64.7 151 25.8
Medtr1g105785 Medicago truncatula HOM05D008036 ORTHO05D000174 9.4e-09 64.7 148 31.1
Actinidia04822 Actinidia chinensis HOM05D000824 ORTHO05D003555 1.2e-08 64.3 151 25.8
Phvul.003G184400 Phaseolus vulgaris HOM05D000824 ORTHO05D003555 1.2e-08 64.3 146 25.3
ATR0177G023 Amborella trichopoda HOM05D000824 ORTHO05D003555 1.6e-08 63.9 150 25.3
Thhalv10003822m.g Eutrema salsugineum HOM05D000824 ORTHO05D003555 1.6e-08 63.9 139 23.7
VMungo1215G1142 Vigna mungo HOM05D000824 ORTHO05D003555 1.6e-08 63.9 151 25.2
DCAR_011568 Daucus carota HOM05D000824 ORTHO05D003555 2.1e-08 63.5 276 20.3
DCAR_011569 Daucus carota HOM05D000824 ORTHO05D003555 2.1e-08 63.5 276 20.3
Duzib205G0152 Durio zibethinus HOM05D000824 ORTHO05D003555 2.1e-08 63.5 151 25.8
QL04p076347 Quercus lobata HOM05D002907 ORTHO05D000065 2.1e-08 63.5 96 29.2
Duzib084G0695 Durio zibethinus HOM05D000824 ORTHO05D003555 3.6e-08 62.8 148 27.0
Nn3g17458 Nelumbo nucifera HOM05D000824 ORTHO05D003555 3.6e-08 62.8 166 27.1
Sp6g34920 Schrenkiella parvula HOM05D000824 ORTHO05D003555 3.6e-08 62.8 142 25.4
Eucgr.B00599 Eucalyptus grandis HOM05D000824 ORTHO05D003555 4.7e-08 62.4 153 26.1
Eucgr.B00601 Eucalyptus grandis HOM05D000824 ORTHO05D003555 4.7e-08 62.4 232 21.6
HanXRQChr02g0044771 Helianthus annuus HOM05D000824 ORTHO05D003555 4.7e-08 62.4 138 28.3
HanXRQChr16g0517661 Helianthus annuus HOM05D000824 ORTHO05D003555 4.7e-08 62.4 148 26.4
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 4.7e-08 62.4 144 26.4
Aqoxy3G03684 Aquilegia oxysepala HOM05D000824 ORTHO05D003555 6.1e-08 62.0 154 24.7
Sp2g24310 Schrenkiella parvula HOM05D000824 ORTHO05D003555 6.1e-08 62.0 139 22.3
BcaC04g23467 Brassica carinata HOM05D000824 ORTHO05D003555 7.9e-08 61.6 144 24.3
A09p07190 Brassica napus HOM05D000824 ORTHO05D003555 7.9e-08 61.6 144 24.3
C09p08030 Brassica napus HOM05D000824 ORTHO05D003555 7.9e-08 61.6 144 24.3
BolC9t53717H Brassica oleracea HOM05D000824 ORTHO05D003555 7.9e-08 61.6 144 24.3
BraA09t36368Z Brassica rapa HOM05D000824 ORTHO05D003555 7.9e-08 61.6 144 24.3
Ah.02g114080 Amaranthus hybridus HOM05D000824 ORTHO05D003555 1.0e-07 61.2 149 28.2
BcaB08g37297 Brassica carinata HOM05D000824 ORTHO05D003555 1.4e-07 60.8 138 24.6
unitig_62.g23555 Utricularia gibba HOM05D000824 ORTHO05D003555 1.4e-07 60.8 242 23.1
ClCG06G015600 Citrullus lanatus HOM05D000824 ORTHO05D003555 1.8e-07 60.5 193 24.4
SMO358G0534 Selaginella moellendorffii HOM05D000824 ORTHO05D003555 1.8e-07 60.5 144 23.6
CDE01G0675 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 2.3e-07 60.1 153 28.8
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 2.3e-07 60.1 144 25.7
Sabra15G0082600 Salix brachista HOM05D000824 ORTHO05D003555 2.3e-07 60.1 170 24.7
CDE11G0897 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 1.1e-06 57.8 153 24.8
Hma1.2p1_0544F.1_g175470 Hydrangea macrophylla HOM05D000824 ORTHO05D002221 1.1e-06 57.8 153 28.1
TWI81G1098 Tripterygium wilfordii HOM05D000824 ORTHO05D003555 1.1e-06 57.8 153 24.8
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.1e-06 57.8 32 81.2
DCAR_024022 Daucus carota HOM05D002907 ORTHO05D005554 1.5e-06 57.4 147 25.2
DCAR_030301 Daucus carota HOM05D002907 ORTHO05D005554 1.5e-06 57.4 153 25.5
Sp6g12850 Schrenkiella parvula HOM05D000305 ORTHO05D000065 2.0e-06 57.0 158 24.7
Medtr5g027390 Medicago truncatula HOM05D002907 ORTHO05D000065 3.3e-06 56.2 144 26.4
THA.LOC104806192 Tarenaya hassleriana HOM05D000824 ORTHO05D002221 3.3e-06 56.2 155 27.1
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.3e-06 56.2 144 25.7
Thhalv10002031m.g Eutrema salsugineum HOM05D000305 ORTHO05D000065 4.4e-06 55.8 147 25.2
Medtr2g041270 Medicago truncatula HOM05D000824 ORTHO05D002221 4.4e-06 55.8 154 26.0
GSVIVG01002032001 Vitis vinifera HOM05D000824 ORTHO05D003555 4.4e-06 55.8 102 26.5
arahy.Tifrunner.gnm1.ann1.J8WCL7 Arachis hypogaea HOM05D000824 ORTHO05D003555 5.7e-06 55.5 176 23.3
C05p18010 Brassica napus HOM05D000313 ORTHO05D000065 5.7e-06 55.5 160 23.1
Peaxi162Scf00005g02517 Petunia axillaris HOM05D002907 ORTHO05D005554 5.7e-06 55.5 142 26.1
Peaxi162Scf00386g00927 Petunia axillaris HOM05D002907 ORTHO05D005554 5.7e-06 55.5 142 26.1
AL6G18410 Arabidopsis lyrata HOM05D000824 ORTHO05D003555 7.4e-06 55.1 98 25.5
Medtr4g070090 Medicago truncatula HOM05D002907 ORTHO05D000065 7.4e-06 55.1 144 26.4
SEGI_31649 Sequoiadendron giganteum HOM05D000824 ORTHO05D010357 7.4e-06 55.1 145 28.3
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 7.4e-06 55.1 144 25.7
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 7.4e-06 55.1 144 25.7
GSVIVG01032320001 Vitis vinifera HOM05D000824 ORTHO05D003555 7.4e-06 55.1 95 28.4
DCAR_004276 Daucus carota HOM05D002907 ORTHO05D000065 9.7e-06 54.7 155 25.2
Medtr2g048550 Medicago truncatula HOM05D000353 ORTHO05D000174 9.7e-06 54.7 164 26.8
GSVIVG01023663001 Vitis vinifera HOM05D000824 ORTHO05D003555 9.7e-06 54.7 95 28.4


User provided reference genes

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