Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 4.3e-168 594.7 335 100.0
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.9e-136 489.6 335 85.1
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 7.7e-133 477.6 330 84.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 3.1e-126 455.7 335 80.3
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 2.6e-125 452.6 335 79.7
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 6.5e-124 448.0 335 78.5
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.2e-123 445.3 335 77.0
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 7.2e-123 444.5 335 77.9
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 9.4e-123 444.1 336 78.0
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.6e-122 443.4 343 76.7
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.6e-122 442.2 335 76.4
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 6.7e-121 438.0 335 77.9
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 6.7e-121 438.0 335 77.3
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.1e-120 437.2 335 76.4
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.5e-120 436.8 335 77.3
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.5e-120 436.8 332 78.3
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.5e-120 436.8 336 77.1
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 3.3e-120 435.6 333 77.8
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 3.3e-120 435.6 332 78.6
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.3e-120 435.6 335 76.7
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 7.4e-120 434.5 335 76.4
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 2.2e-119 433.0 335 75.2
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 4.8e-119 431.8 330 78.5
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 4.8e-119 431.8 335 75.5
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 4.8e-119 431.8 336 77.4
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 8.2e-119 431.0 332 77.7
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-118 430.6 335 76.1
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.4e-118 430.3 343 74.1
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.8e-118 429.9 341 75.1
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.4e-118 429.5 336 77.4
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.1e-118 428.7 337 76.0
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 1.2e-117 427.2 332 75.6
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 1.2e-117 427.2 335 75.2
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.6e-117 426.8 335 76.1
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.0e-117 426.4 335 74.6
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 2.6e-117 426.0 386 69.9
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 3.5e-117 425.6 335 75.8
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 3.5e-117 425.6 337 74.5
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 7.7e-117 424.5 335 74.6
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 7.7e-117 424.5 335 74.9
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 1.0e-116 424.1 345 75.9
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.0e-116 424.1 336 75.3
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 1.3e-116 423.7 336 76.2
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 1.7e-116 423.3 335 73.7
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.7e-116 423.3 335 75.2
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 2.9e-116 422.5 336 74.7
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 5.0e-116 421.8 336 75.9
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 5.0e-116 421.8 335 75.5
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 5.0e-116 421.8 337 75.4
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 5.0e-116 421.8 335 75.2
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 6.5e-116 421.4 330 75.5
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.5e-115 420.2 337 76.0
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.9e-115 419.9 343 74.1
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.5e-115 419.5 336 75.6
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.5e-115 419.5 335 72.8
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 7.2e-115 417.9 337 75.7
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 7.2e-115 417.9 283 82.7
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 6.1e-114 414.8 337 72.4
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.0e-113 414.1 330 73.6
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.0e-113 414.1 335 74.3
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.8e-113 413.3 337 75.7
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 4.0e-113 412.1 336 73.2
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 6.7e-113 411.4 337 73.6
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 8.8e-113 411.0 338 71.9
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.2e-112 410.6 338 71.9
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 1.5e-112 410.2 368 70.1
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 2.6e-112 409.5 332 75.9
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 4.4e-112 408.7 337 71.8
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 5.7e-112 408.3 335 71.6
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 9.7e-112 407.5 338 74.6
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 9.7e-112 407.5 337 72.4
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 9.7e-112 407.5 335 73.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.3e-111 407.1 336 72.3
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.7e-111 406.8 336 72.3
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.8e-111 406.0 339 71.7
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 2.8e-111 406.0 340 74.1
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 3.7e-111 405.6 335 72.2
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.8e-111 405.2 259 89.2
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 6.3e-111 404.8 348 71.3
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.1e-110 404.1 336 71.1
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.1e-110 404.1 335 73.7
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.1e-110 404.1 335 71.0
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.4e-110 403.7 339 73.7
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.4e-110 403.7 329 73.3
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.1e-110 402.5 337 72.1
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 4.1e-110 402.1 341 71.6
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.1e-110 402.1 335 73.4
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 4.1e-110 402.1 318 75.8
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 7.0e-110 401.4 333 72.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 9.1e-110 401.0 335 72.5
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 9.1e-110 401.0 335 72.5
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 9.1e-110 401.0 335 72.8
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.2e-109 400.6 311 69.8
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 1.6e-109 400.2 334 74.6
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 1.6e-109 400.2 335 72.8
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 1.6e-109 400.2 335 72.8
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 1.6e-109 400.2 330 72.1
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.6e-109 400.2 335 73.1
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.6e-109 400.2 335 71.9
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 2.7e-109 399.4 336 72.9
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 4.5e-109 398.7 324 73.5
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 4.5e-109 398.7 336 72.0
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 4.5e-109 398.7 337 73.0
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.3e-108 397.1 335 72.5
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.2e-107 392.5 335 72.5
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.2e-107 392.1 335 72.5
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 5.5e-107 391.7 335 69.9
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 7.2e-107 391.3 332 70.2
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 7.2e-107 391.3 335 70.1
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 7.2e-107 391.3 335 72.8
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.2e-106 390.6 321 73.8
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.2e-106 390.6 335 69.6
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.6e-106 390.2 336 72.9
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 2.7e-106 389.4 335 69.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.7e-106 389.4 335 70.4
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.7e-106 389.4 338 72.2
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.7e-106 389.4 342 71.1
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 3.6e-106 389.0 321 72.0
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 8.0e-106 387.9 310 76.1
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.3e-105 386.3 256 78.1
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 4.0e-105 385.6 332 69.6
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 4.0e-105 385.6 332 69.6
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 6.8e-105 384.8 331 71.0
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 6.8e-105 384.8 331 70.7
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 6.8e-105 384.8 309 74.8
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.5e-104 383.6 331 71.6
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.0e-104 383.3 335 69.3
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 7.5e-104 381.3 275 78.9
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 7.5e-104 381.3 332 69.0
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 7.5e-104 381.3 332 69.0
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 9.8e-104 380.9 332 69.0
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.7e-103 380.2 261 84.7
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.8e-103 378.6 309 73.8
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.4e-102 377.1 336 69.6
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.5e-101 372.1 293 75.1
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.1e-99 367.5 273 77.3
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 6.1e-98 361.7 316 69.6
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.4e-96 355.9 250 85.2
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.5e-96 354.8 335 59.7
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 3.7e-95 352.4 321 67.0
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.9e-95 352.1 313 69.0
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.1e-94 350.9 311 69.8
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 5.4e-94 348.6 312 69.9
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.9e-93 345.1 231 87.4
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.5e-91 340.5 345 66.4
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.2e-90 337.4 231 82.7
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.4e-89 334.0 368 60.1
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 1.7e-87 327.0 274 66.4
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.4e-86 323.9 317 63.1
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 9.5e-83 311.2 317 62.8
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 9.5e-83 311.2 317 62.8
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 2.8e-82 309.7 252 63.9
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.8e-80 302.0 273 63.7
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 1.3e-79 300.8 252 77.4
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.7e-79 299.3 248 66.9
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.6e-77 293.9 262 73.3
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.7e-77 293.1 250 61.6
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 3.5e-77 292.7 257 72.0
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.3e-73 280.0 196 84.7
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.2e-70 269.6 244 73.8
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.1e-57 226.5 125 88.0
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.9e-55 219.9 262 46.6
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 2.9e-55 219.9 268 48.9
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.6e-53 214.2 149 73.8
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-48 198.0 124 79.0
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 8.4e-47 191.8 149 68.5
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 1.2e-45 188.0 202 64.9
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.3e-43 179.9 230 59.6
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.3e-41 172.6 102 85.3
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 9.6e-35 151.8 261 41.4
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.3e-34 151.4 143 60.1
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 2.6e-32 143.7 97 72.2
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 8.4e-31 138.7 88 76.1
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.6e-29 134.4 108 73.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 3.4e-24 116.7 88 72.7
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 6.7e-20 102.4 171 49.7
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 2.8e-18 97.1 172 49.4
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 4.8e-18 96.3 107 67.3
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.5e-16 89.7 83 79.5
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.1e-14 85.1 131 45.0
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 2.0e-11 74.3 93 47.3
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 1.1e-06 58.5 81 34.6


User provided reference genes

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