Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR622G0681 Trochodendron aralioides HOM05D001013 ORTHO05D004597 1.3e-69 266.2 129 100.0
TAR633G1179 Trochodendron aralioides HOM05D001013 ORTHO05D004597 5.7e-36 154.5 90 81.1
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.3e-35 153.3 93 83.9
Nn2g15465 Nelumbo nucifera HOM05D001013 ORTHO05D004597 8.3e-35 150.6 90 78.9
TAR636G2042 Trochodendron aralioides HOM05D001013 ORTHO05D004597 1.4e-34 149.8 90 78.9
QL01p005011 Quercus lobata HOM05D001013 ORTHO05D004597 2.3e-32 142.5 81 79.0
Dinv36267 Davidia involucrata HOM05D001013 ORTHO05D004597 3.8e-32 141.7 82 80.5
MBI01_g42707_MAGBIO Magnolia biondii HOM05D001013 ORTHO05D004597 6.5e-32 141.0 81 79.0
Cc07_g19600 Coffea canephora HOM05D001013 ORTHO05D004597 4.2e-31 138.3 90 70.0
MSTRG.18423 Avicennia marina HOM05D001013 ORTHO05D004597 5.5e-31 137.9 79 82.3
CiPaw.14G119800 Carya illinoinensis HOM05D001013 ORTHO05D004597 9.5e-31 137.1 82 76.8
RcHm_v2.0_Chr5g0051661 Rosa chinensis HOM05D001013 ORTHO05D004597 9.5e-31 137.1 90 72.2
Eucgr.J00780 Eucalyptus grandis HOM05D001013 ORTHO05D004597 1.2e-30 136.7 90 72.2
Haze_23121 Corylus avellana HOM05D001013 ORTHO05D004597 1.6e-30 136.3 86 72.1
Rhsim13G0222300 Rhododendron simsii HOM05D001013 ORTHO05D004597 1.6e-30 136.3 82 78.0
Migut.D00590 Erythranthe guttata HOM05D001013 ORTHO05D004597 3.6e-30 135.2 79 79.7
FAN21G2353 Fragaria x ananassa HOM05D001013 ORTHO05D004597 3.6e-30 135.2 82 75.6
FAN25G2450 Fragaria x ananassa HOM05D001013 ORTHO05D004597 3.6e-30 135.2 82 75.6
MELO3C015199.2 Cucumis melo HOM05D001013 ORTHO05D004597 4.7e-30 134.8 82 74.4
Eucgr.J00782 Eucalyptus grandis HOM05D001013 ORTHO05D004597 4.7e-30 134.8 90 71.1
Cfa009756 Carpinus fangiana HOM05D001013 ORTHO05D004597 8.0e-30 134.0 86 72.1
CsaV3_1G042760 Cucumis sativus L. HOM05D001013 ORTHO05D004597 8.0e-30 134.0 82 74.4
MD03G1177200 Malus domestica HOM05D001013 ORTHO05D004597 1.0e-29 133.7 82 76.8
GSVIVG01025282001 Vitis vinifera HOM05D001013 ORTHO05D004597 1.0e-29 133.7 90 71.1
MD11G1197900 Malus domestica HOM05D001013 ORTHO05D004597 1.4e-29 133.3 82 75.6
FvH4_3g29000 Fragaria vesca HOM05D001013 ORTHO05D004597 1.8e-29 132.9 82 74.4
FAN11G2909 Fragaria x ananassa HOM05D001013 ORTHO05D004597 1.8e-29 132.9 82 74.4
Aqoxy1G00274 Aquilegia oxysepala HOM05D001013 ORTHO05D004597 2.3e-29 132.5 90 68.9
CSS0021836 Camellia sinensis var. sinensis HOM05D001013 ORTHO05D004597 2.3e-29 132.5 79 78.5
PSO384G0041 Papaver somniferum HOM05D001013 ORTHO05D004597 2.3e-29 132.5 90 70.0
PSO384G2146 Papaver somniferum HOM05D001013 ORTHO05D004597 2.3e-29 132.5 90 70.0
PGR119G0568 Punica granatum HOM05D001013 ORTHO05D004597 2.3e-29 132.5 82 76.8
arahy.Tifrunner.gnm1.ann1.EX6ZD6 Arachis hypogaea HOM05D001013 ORTHO05D004597 3.0e-29 132.1 90 70.0
Manes.06G165500 Manihot esculenta HOM05D001013 ORTHO05D004597 3.0e-29 132.1 82 74.4
Peaxi162Scf01427g00007 Petunia axillaris HOM05D001013 ORTHO05D004597 3.0e-29 132.1 82 76.8
arahy.Tifrunner.gnm1.ann1.I21QA9 Arachis hypogaea HOM05D001013 ORTHO05D004597 4.0e-29 131.7 90 68.9
Gohir.A09G114800 Gossypium hirsutum HOM05D001013 ORTHO05D004597 4.0e-29 131.7 82 74.4
Gohir.D09G111500 Gossypium hirsutum HOM05D001013 ORTHO05D004597 4.0e-29 131.7 82 74.4
Gorai.006G129200 Gossypium raimondii HOM05D001013 ORTHO05D004597 4.0e-29 131.7 82 74.4
COL.COLO4_24880 Corchorus olitorius HOM05D001013 ORTHO05D004597 5.2e-29 131.3 82 74.4
Medtr2g098030 Medicago truncatula HOM05D001013 ORTHO05D004597 5.2e-29 131.3 90 67.8
Hund22038 Selenicereus undatus HOM05D001013 ORTHO05D004597 5.2e-29 131.3 90 66.7
Thecc.09G231300 Theobroma cacao HOM05D001013 ORTHO05D004597 5.2e-29 131.3 82 73.2
TWI34G0448 Tripterygium wilfordii HOM05D001013 ORTHO05D004597 6.8e-29 131.0 80 73.8
Ah.06g194350 Amaranthus hybridus HOM05D001013 ORTHO05D004597 8.8e-29 130.6 90 70.0
CANSAT01G2178 Cannabis sativa HOM05D001013 ORTHO05D004597 8.8e-29 130.6 82 73.2
Duzib170G0402 Durio zibethinus HOM05D001013 ORTHO05D004597 8.8e-29 130.6 82 73.2
Potri.009G054600 Populus trichocarpa HOM05D001013 ORTHO05D004597 1.2e-28 130.2 82 73.2
MD11G1161000 Malus domestica HOM05D001013 ORTHO05D004597 1.5e-28 129.8 82 74.4
Atru.chr3.2746 Acer truncatum HOM05D001013 ORTHO05D004597 2.0e-28 129.4 82 70.7
Carub.0007s0540 Capsella rubella HOM05D001013 ORTHO05D004597 2.0e-28 129.4 82 74.4
ClCG03G013290 Citrullus lanatus HOM05D001013 ORTHO05D004597 2.0e-28 129.4 82 72.0
Phvul.L009543 Phaseolus vulgaris HOM05D001013 ORTHO05D004597 2.0e-28 129.4 82 73.2
TAR636G1523 Trochodendron aralioides HOM05D001013 ORTHO05D004597 2.0e-28 129.4 85 76.5
Ca_01292_v3 Cicer arietinum L. HOM05D001013 ORTHO05D004597 2.6e-28 129.0 90 67.8
ECA238G2654 Erigeron canadensis HOM05D001013 ORTHO05D004597 2.6e-28 129.0 79 75.9
Solyc11g065920.2 Solanum lycopersicum HOM05D001013 ORTHO05D004597 2.6e-28 129.0 82 74.4
Sopen11g025660 Solanum pennellii HOM05D001013 ORTHO05D004597 2.6e-28 129.0 82 74.4
HPP92_023576 Vanilla planifolia HOM05D001013 ORTHO05D004597 2.6e-28 129.0 82 70.7
VMungo1080G0609 Vigna mungo HOM05D001013 ORTHO05D004597 2.6e-28 129.0 82 72.0
CDE05G3370 Ceratophyllum demersum HOM05D001013 ORTHO05D004597 3.4e-28 128.6 84 70.2
Ciclev10014051m.g Citrus clementina HOM05D001013 ORTHO05D004597 3.4e-28 128.6 90 66.7
A01p03620 Brassica napus HOM05D001013 ORTHO05D004597 4.4e-28 128.3 82 74.4
BraA01t00348Z Brassica rapa HOM05D001013 ORTHO05D004597 4.4e-28 128.3 82 74.4
Psat5g286360 Pisum sativum HOM05D001013 ORTHO05D004597 4.4e-28 128.3 90 67.8
Sabra09G0039900 Salix brachista HOM05D001013 ORTHO05D004597 4.4e-28 128.3 82 72.0
SGA_v2.0_scaffold247G44871 Striga asiatica HOM05D001013 ORTHO05D004597 4.4e-28 128.3 80 78.8
BcaNung00646 Brassica carinata HOM05D001013 ORTHO05D004597 5.7e-28 127.9 83 72.3
Lj3g0023347 Lotus japonicus HOM05D001013 ORTHO05D004597 5.7e-28 127.9 90 68.9
THA.LOC104817905 Tarenaya hassleriana HOM05D001013 ORTHO05D004597 5.7e-28 127.9 82 73.2
CAN.G327.12 Capsicum annuum HOM05D001013 ORTHO05D004597 9.8e-28 127.1 82 73.2
Lsat_1_v5_gn_2_97481 Lactuca sativa HOM05D001013 ORTHO05D004597 9.8e-28 127.1 77 76.6
Lalb_Chr24g0397071 Lupinus albus HOM05D001013 ORTHO05D004597 1.3e-27 126.7 82 72.0
TPR.G6821 Trifolium pratense HOM05D001013 ORTHO05D004597 1.3e-27 126.7 90 65.6
BcaB01g02072 Brassica carinata HOM05D001013 ORTHO05D004597 1.7e-27 126.3 83 73.5
C01p03910 Brassica napus HOM05D001013 ORTHO05D004597 1.7e-27 126.3 82 73.2
BolC1t00384H Brassica oleracea HOM05D001013 ORTHO05D004597 1.7e-27 126.3 82 73.2
AL7G16310 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 2.2e-27 125.9 82 72.0
AT4G34890 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 2.2e-27 125.9 82 72.0
Lsat_1_v5_gn_2_97521 Lactuca sativa HOM05D001013 ORTHO05D004597 2.2e-27 125.9 79 75.9
Lj2A632G19 Lonicera japonica HOM05D001013 ORTHO05D004597 2.2e-27 125.9 80 75.0
Sp7g32650 Schrenkiella parvula HOM05D001013 ORTHO05D004597 2.2e-27 125.9 82 73.2
Solyc11g065930.3 Solanum lycopersicum HOM05D001013 ORTHO05D004597 2.2e-27 125.9 82 73.2
Sopen11g025670 Solanum pennellii HOM05D001013 ORTHO05D004597 2.2e-27 125.9 82 73.2
DCAR_002067 Daucus carota HOM05D001013 ORTHO05D004597 2.8e-27 125.6 76 73.7
Glyma.15G034000 Glycine max HOM05D001013 ORTHO05D004597 2.8e-27 125.6 82 70.7
Prupe.4G245700 Prunus persica HOM05D001013 ORTHO05D004597 2.8e-27 125.6 82 70.7
CARHR243170 Cardamine hirsuta HOM05D001013 ORTHO05D004597 3.7e-27 125.2 89 67.4
C09p01710 Brassica napus HOM05D001013 ORTHO05D004597 4.9e-27 124.8 83 74.7
BolC9t53105H Brassica oleracea HOM05D001013 ORTHO05D004597 4.9e-27 124.8 83 74.7
AUR62000107 Chenopodium quinoa HOM05D001013 ORTHO05D004597 4.9e-27 124.8 82 70.7
Aa31LG2G15640 Aethionema arabicum HOM05D001013 ORTHO05D004597 6.3e-27 124.4 82 73.2
EL10Ac4g10268 Beta vulgaris HOM05D001013 ORTHO05D004597 6.3e-27 124.4 82 69.5
EL10Ac4g10284 Beta vulgaris HOM05D001013 ORTHO05D004597 6.3e-27 124.4 82 69.5
CARHR250380 Cardamine hirsuta HOM05D001013 ORTHO05D004597 8.3e-27 124.0 83 73.5
AUR62019282 Chenopodium quinoa HOM05D001013 ORTHO05D004597 1.1e-26 123.6 82 69.5
Thhalv10024224m.g Eutrema salsugineum HOM05D001013 ORTHO05D004597 1.1e-26 123.6 82 72.0
Sed0014521 Sechium edule HOM05D001013 ORTHO05D004597 1.1e-26 123.6 82 68.3
AL6G50970 Arabidopsis lyrata HOM05D001013 ORTHO05D004597 1.4e-26 123.2 83 73.5
ECA238G2169 Erigeron canadensis HOM05D001013 ORTHO05D004597 1.4e-26 123.2 79 74.7
Nitab4.5_0001800g0150 Nicotiana tabacum HOM05D001013 ORTHO05D004597 2.4e-26 122.5 79 72.2
BcaC04g24043 Brassica carinata HOM05D001013 ORTHO05D004597 3.1e-26 122.1 83 72.3
Nitab4.5_0006994g0020 Nicotiana tabacum HOM05D001013 ORTHO05D004597 7.0e-26 120.9 79 72.2
Zm00001eb021020 Zea mays HOM05D001013 ORTHO05D004597 9.2e-26 120.6 82 69.5
ATR0605G208 Amborella trichopoda HOM05D001013 ORTHO05D004597 1.6e-25 119.8 78 71.8
EL10Ac4g10161 Beta vulgaris HOM05D001013 ORTHO05D004597 1.6e-25 119.8 76 71.1
AT4G34900 Arabidopsis thaliana HOM05D001013 ORTHO05D004597 2.0e-25 119.4 82 67.1
BraA09t35819Z Brassica rapa HOM05D001013 ORTHO05D004597 2.0e-25 119.4 83 72.3
A09p01610 Brassica napus HOM05D001013 ORTHO05D004597 2.7e-25 119.0 83 72.3
Actinidia16323 Actinidia chinensis HOM05D001013 ORTHO05D004597 3.5e-25 118.6 78 69.2
SEGI_15558 Sequoiadendron giganteum HOM05D001013 ORTHO05D004597 4.5e-25 118.2 82 67.1
Pp3c20_16340 Physcomitrium patens HOM05D001013 ORTHO05D004597 7.8e-25 117.5 79 69.6
AagrBONN_evm.TU.Sc2ySwM_228.138 Anthoceros agrestis HOM05D001013 ORTHO05D004597 1.7e-24 116.3 79 70.9
arahy.Tifrunner.gnm1.ann1.V5338L Arachis hypogaea HOM05D001013 ORTHO05D004597 3.8e-24 115.2 77 70.1
unitig_90.g27489 Utricularia gibba HOM05D001013 ORTHO05D004597 3.8e-24 115.2 80 68.8
AUR62019283 Chenopodium quinoa HOM05D001013 ORTHO05D004597 8.6e-24 114.0 82 67.1
Os03g0429800 Oryza sativa ssp. japonica HOM05D001013 ORTHO05D004597 8.6e-24 114.0 82 67.1
SMO351G0580 Selaginella moellendorffii HOM05D001013 ORTHO05D004597 4.3e-23 111.7 79 64.6
CBR_g30957 Chara braunii HOM05D001013 ORTHO05D004597 5.6e-23 111.3 79 64.6
Mapoly0014s0136 Marchantia polymorpha HOM05D001013 ORTHO05D004597 5.6e-23 111.3 86 60.5
Cre12.g545101 Chlamydomonas reinhardtii HOM05D001013 ORTHO05D004597 2.4e-18 95.9 77 53.2
Thecc.09G231200 Theobroma cacao HOM05D018466 ORTHO05D004597 5.0e-16 88.2 62 69.4
PRCOL_00001493 Prasinoderma coloniale HOM05D001013 ORTHO05D004597 1.6e-14 83.2 80 47.5
A09p01670 Brassica napus HOM05D000125 ORTHO05D000120 4.0e-13 78.6 60 66.7
Carub.0007s3024 Capsella rubella HOM05D001487 ORTHO05D001365 4.0e-13 78.6 68 57.4
MCO15G310 Micromonas commoda HOM05D001013 ORTHO05D004597 6.8e-13 77.8 70 54.3
TAR362G0593 Trochodendron aralioides HOM05D001013 ORTHO05D414574 2.0e-12 76.3 46 78.3
BcaB01g02071 Brassica carinata HOM05D001013 ORTHO05D004597 3.7e-11 72.0 56 66.1
SMO137G0288 Selaginella moellendorffii HOM05D001013 ORTHO05D001703 6.2e-06 54.7 65 41.5


User provided reference genes

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