Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.9e-69 265.8 138 100.0
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 8.3e-33 144.1 233 45.9
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.5e-26 123.2 232 40.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.4e-26 122.1 234 40.6
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.4e-26 121.7 249 39.8
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.3e-25 120.2 233 41.2
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.2e-25 119.4 232 40.9
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.2e-25 119.4 232 40.9
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 4.9e-25 118.2 233 38.6
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.8e-24 116.3 220 40.5
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.4e-24 115.9 201 41.8
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.1e-24 115.2 233 38.6
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 7.0e-24 114.4 232 40.1
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 1.2e-23 113.6 233 39.5
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-23 113.2 228 39.9
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.6e-23 113.2 233 39.5
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.0e-23 112.8 232 40.9
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 2.7e-23 112.5 229 39.7
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.7e-23 112.5 228 37.3
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.5e-23 112.1 233 37.3
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 4.6e-23 111.7 228 36.8
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 7.8e-23 110.9 235 40.0
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.0e-22 110.5 234 38.9
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.0e-22 110.5 228 37.3
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.0e-22 110.5 233 39.5
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.3e-22 110.2 235 37.9
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 1.3e-22 110.2 229 37.6
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.7e-22 109.8 235 39.1
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 1.7e-22 109.8 232 38.4
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 2.3e-22 109.4 233 37.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.3e-22 109.4 214 40.7
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.9e-22 109.0 234 38.9
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 3.9e-22 108.6 229 39.3
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.9e-22 108.6 228 36.0
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 5.0e-22 108.2 232 38.4
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 6.6e-22 107.8 232 38.4
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 6.6e-22 107.8 233 38.6
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 1.1e-21 107.1 232 39.2
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.1e-21 107.1 232 37.9
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.1e-21 107.1 232 37.9
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.5e-21 106.7 228 36.0
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 1.9e-21 106.3 233 39.1
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.9e-21 106.3 234 37.6
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.9e-21 106.3 228 37.3
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.5e-21 105.9 232 37.9
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.5e-21 105.9 227 38.8
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 3.3e-21 105.5 232 37.9
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 3.3e-21 105.5 228 36.0
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 3.3e-21 105.5 228 37.3
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 4.3e-21 105.1 232 37.9
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 4.3e-21 105.1 228 36.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 4.3e-21 105.1 232 37.1
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 4.3e-21 105.1 232 37.9
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 5.6e-21 104.8 233 37.3
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 5.6e-21 104.8 228 36.0
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 9.5e-21 104.0 233 36.5
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.6e-20 103.2 228 35.5
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 2.1e-20 102.8 230 37.8
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 2.1e-20 102.8 228 35.5
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.1e-20 102.8 232 37.9
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 3.6e-20 102.1 88 63.6
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 3.6e-20 102.1 232 37.9
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 3.6e-20 102.1 228 36.0
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 4.7e-20 101.7 232 37.9
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 6.1e-20 101.3 232 36.2
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 6.1e-20 101.3 232 37.5
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 8.0e-20 100.9 232 37.1
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.0e-20 100.9 233 36.5
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 1.0e-19 100.5 233 37.8
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 1.4e-19 100.1 236 37.3
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.4e-19 100.1 231 35.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.3e-19 99.4 230 37.0
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 3.1e-19 99.0 233 37.3
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 5.2e-19 98.2 232 37.5
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 6.8e-19 97.8 228 36.4
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 8.9e-19 97.4 232 36.2
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.5e-18 96.7 232 37.1
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 2.6e-18 95.9 228 34.2
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 2.6e-18 95.9 124 50.8
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.4e-18 95.1 230 35.2
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 5.8e-18 94.7 200 38.5
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 7.5e-18 94.4 232 35.3
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 9.8e-18 94.0 232 35.3
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 9.8e-18 94.0 232 35.3
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.3e-17 93.6 232 34.9
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.7e-17 93.2 227 36.6
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 2.2e-17 92.8 230 33.5
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.9e-17 92.4 232 35.3
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.9e-17 92.4 232 35.3
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 2.9e-17 92.4 232 35.3
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.9e-17 92.4 166 39.8
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 3.7e-17 92.0 232 34.9
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 4.9e-17 91.7 232 34.9
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 8.3e-17 90.9 228 34.6
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 8.3e-17 90.9 55 80.0
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 8.3e-17 90.9 228 33.8
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.4e-16 90.1 228 32.5
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 7.0e-16 87.8 259 33.2
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.3e-14 82.8 64 65.6
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 5.0e-14 81.6 161 39.8
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 8.6e-14 80.9 224 29.9
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.1e-11 72.4 89 49.4
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.5e-10 70.1 175 34.9
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.0e-10 69.7 205 35.6
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.3e-09 67.0 214 33.2
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.9e-09 65.9 236 32.2
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 8.3e-09 64.3 206 31.6
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.1e-08 63.9 49 63.3
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-08 63.9 205 31.7
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.1e-08 63.9 203 30.5
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.4e-08 62.8 217 31.8
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.1e-08 62.0 82 43.9
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 7.1e-08 61.2 199 31.2
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 2.1e-07 59.7 35 80.0
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.7e-07 59.3 206 33.0
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 7.8e-07 57.8 212 31.6


User provided reference genes

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